Credit hours
In-class work per week |
Practice per week |
Credits |
Duration |
Total |
16 |
8 |
4 |
2 weeks |
60 hours |
Instructor
Aline Silva Mello Cesar
Luiz Lehmann Coutinho
Objective
Provide the students with the necesary training in bioinformatics for microbail community analysis.
Content
Introduction, basic command line, introduction to R, sequencing technologies, microbial community amplicons, data processing, experimental design, Phyloseq package.
Bibliography
McMurdie, P. J. & Holmes, S. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PloS one 8, e61217 (2013).