PT AU BA BE GP AF BF CA TI SO SE BS LA DT CT CY CL SP HO DE ID AB C1 RP EM RI OI FU FX CR NR TC Z9 U1 U2 PU PI PA SN EI BN J9 JI PD PY VL IS PN SU SI MA BP EP AR DI D2 EA PG WC SC GA UT PM OA HC HP DA J Phan, T Tung Phan Novel coronavirus: From discovery to clinical diagnostics INFECTION GENETICS AND EVOLUTION English Article China; coronavirus; Bat; Pneumonia A novel coronavirus designated as 2019-nCoV first appeared in Wuhan, China in late December 2019. Dozens of people died in China, and thousands of people infected as 2019-nCoV continues to spread around the world. We have described the discovery, emergence, genomic characteristics, and clinical diagnostics of 2019-nCoV. [Tung Phan] Univ Pittsburgh, Div Clin Microbiol, Pittsburgh, PA 15260 USA; [Tung Phan] Univ Pittsburgh, Med Ctr, Pittsburgh, PA 15260 USA Phan, T (reprint author), Univ Pittsburgh, Div Clin Microbiol, Pittsburgh, PA 15260 USA.; Phan, T (reprint author), Univ Pittsburgh, Med Ctr, Pittsburgh, PA 15260 USA. phantg@upmc.edu Division of Clinical Microbiology, University of Pittsburgh Medical Center We acknowledge support from Division of Clinical Microbiology, University of Pittsburgh Medical Center. 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G.; Magiorkinis, G.; Panayiotakopoulos, G.; Sourvinos, G.; Tsiodras, S. Full-genome evolutionary analysis of the novel corona virus (2019-nCoV) rejects the hypothesis of emergence as a result of a recent recombination event INFECTION GENETICS AND EVOLUTION English Article Novel coronavirus; Genomic sequence analysis; Phylogenetic analysis; Recombination; Origin; Molecular epidemiology RESPIRATORY SYNDROME CORONAVIRUS; SARS-CORONAVIRUS; COV Background: A novel coronavirus (2019-nCoV) associated with human to human transmission and severe human infection has been recently reported from the city of Wuhan in China. Our objectives were to characterize the genetic relationships of the 2019-nCoV and to search for putative recombination within the subgenus of sarbecovirus. Methods: Putative recombination was investigated by RDP4 and Simplot v3.5.1 and discordant phylogenetic clustering in individual genomic fragments was confirmed by phylogenetic analysis using maximum likelihood and Bayesian methods. Results: Our analysis suggests that the 2019-nCoV although closely related to BatCoV RaTG13 sequence throughout the genome (sequence similarity 96.3%), shows discordant clustering with the Bat_SARS-like coronavirus sequences. Specifically, in the 5'-part spanning the first 11,498 nucleotides and the last 3'-part spanning 24,341-30,696 positions, 2019-nCoV and RaTG13 formed a single cluster with Bat_SARS-like coronavirus sequences, whereas in the middle region spanning the 3'-end of ORF1a, the ORF1b and almost half of the spike regions, 2019-nCoV and RaTG13 grouped in a separate distant lineage within the sarbecovirus branch. Conclusions: The levels of genetic similarity between the 2019-nCoV and RaTG13 suggest that the latter does not provide the exact variant that caused the outbreak in humans, but the hypothesis that 2019-nCoV has originated from bats is very likely. We show evidence that the novel coronavirus (2019-nCov) is not-mosaic consisting in almost half of its genome of a distinct lineage within the betacoronavirus. These genomic features and their potential association with virus characteristics and virulence in humans need further attention. [Paraskevis, D.; Kostaki, E. G.; Magiorkinis, G.] Natl & Kapodistrian Univ Athens, Med Sch, Dept Hyg Epidemiol & Med Stat, Athens, Greece; [Panayiotakopoulos, G.] NPHO, Athens, Greece; [Sourvinos, G.] Univ Crete, Sch Med, Lab Clin Virol, Iraklion, Greece; [Tsiodras, S.] Natl & Kapodistrian Univ Athens, Med Sch, Athens, Greece Paraskevis, D (reprint author), Univ Athens, Sch Med, Dept Hyg Epidemiol & Med Stat, 75 Mikras Asias St, Athens 11527, Greece. dparask@med.uoa.gr Ribeiro, Nuno/AAH-2299-2020 Paraskevis, Dimitrios/0000-0001-6167-7152; Kostaki, Evangelia/0000-0002-3346-0930 Al Hajjar S, 2013, ANN SAUDI MED, V33, P427, DOI 10.5144/0256-4947.2013.427; Alagaili AN, 2014, MBIO, V5, DOI 10.1128/mBio.00884-14; Babcock GJ, 2004, J VIROL, V78, P4552, DOI 10.1128/JVI.78.9.4552-4560.2004; Cui J, 2019, NAT REV MICROBIOL, V17, P181, DOI 10.1038/s41579-018-0118-9; Drosten C, 2003, NEW ENGL J MED, V348, P1967, DOI 10.1056/NEJMoa030747; ECDC, 2020, ECDC TECHN REP; Fehr AR, 2015, METHODS MOL BIOL, V1282, P1, DOI 10.1007/978-1-4939-2438-7_1; Guan Y, 2003, SCIENCE, V302, P276, DOI 10.1126/science.1087139; Huelsenbeck JP, 2001, BIOINFORMATICS, V17, P754, DOI 10.1093/bioinformatics/17.8.754; Hui DS, 2020, INT J INFECT DIS, V91, P264, DOI 10.1016/j.ijid.2020.01.009; Ithete NL, 2013, EMERG INFECT DIS, V19, P1697, DOI 10.3201/eid1910.130946; Ji W, 2020, INT J INFECT DIS, V91, P264; Kahn Jeffrey S, 2005, Pediatr Infect Dis J, V24, pS223, DOI 10.1097/01.inf.0000188166.17324.60; Katoh K, 2013, MOL BIOL EVOL, V30, P772, DOI 10.1093/molbev/mst010; Ksiazek TG, 2003, NEW ENGL J MED, V348, P1953, DOI 10.1056/NEJMoa030781; Lau SKP, 2005, P NATL ACAD SCI USA, V102, P14040, DOI 10.1073/pnas.0506735102; Li WD, 2005, SCIENCE, V310, P676, DOI 10.1126/science.1118391; Li WH, 2005, EMBO J, V24, P1634, DOI 10.1038/sj.emboj.7600640; Lole KS, 1999, J VIROL, V73, P152, DOI 10.1128/JVI.73.1.152-160.1999; Magiorkinis G, 2004, J MED VIROL, V74, P369, DOI 10.1002/jmv.20187; Martin DP, 2015, VIRUS EVOL, V1, DOI 10.1093/ve/vev003; Paules CI, 2020, JAMA-J AM MED ASSOC, V323, P707, DOI 10.1001/jama.2020.0757; Peiris JSM, 2003, LANCET, V361, P1319, DOI 10.1016/S0140-6736(03)13077-2; Perlman S, 2020, NEW ENGL J MED, V382, P760, DOI 10.1056/NEJMe2001126; Stecher Glen, 2020, Mol Biol Evol, V37, P1237, DOI 10.1093/molbev/msz312; Swofford D.L., 2003, PAUP PHYLOGENETIC AN; WHO, 2018, ANN REV DIS PRIOR RE; World Health Organization, 2020, NOV COR 2019 NCOV SI; Zaki AM, 2012, NEW ENGL J MED, V367, P1814, DOI 10.1056/NEJMoa1211721; Zhou P, 2020, DISCOVERY NOVEL CORO; Zhu N, 2020, N ENGL J MED 31 4 4 473 473 ELSEVIER AMSTERDAM RADARWEG 29, 1043 NX AMSTERDAM, NETHERLANDS 1567-1348 1567-7257 INFECT GENET EVOL Infect. 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APR 2020 79 104212 10.1016/j.meegid.2020.104212 4 Infectious Diseases Infectious Diseases KH7YP WOS:000510866400018 32004758 Bronze 2020-04-01 J Huang, CL; Wang, YM; Li, XW; Ren, LL; Zhao, JP; Hu, Y; Zhang, L; Fan, GH; Xu, JY; Gu, XY; Cheng, ZS; Yu, T; Xia, JA; Wei, Y; Wu, WJ; Xie, XL; Yin, W; Li, H; Liu, M; Xiao, Y; Gao, H; Guo, L; Xie, JG; Wang, GF; Jiang, RM; Gao, ZC; Jin, Q; Wang, JW; Cao, B Huang, Chaolin; Wang, Yeming; Li, Xingwang; Ren, Lili; Zhao, Jianping; Hu, Yi; Zhang, Li; Fan, Guohui; Xu, Jiuyang; Gu, Xiaoying; Cheng, Zhenshun; Yu, Ting; Xia, Jiaan; Wei, Yuan; Wu, Wenjuan; Xie, Xuelei; Yin, Wen; Li, Hui; Liu, Min; Xiao, Yan; Gao, Hong; Guo, Li; Xie, Jungang; Wang, Guangfa; Jiang, Rongmeng; Gao, Zhancheng; Jin, Qi; Wang, Jianwei; Cao, Bin Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China LANCET English Article EAST RESPIRATORY SYNDROME; INFLAMMATORY CYTOKINES; SARS Background A recent cluster of pneumonia cases in Wuhan, China, was caused by a novel betacoronavirus, the 2019 novel coronavirus (2019-nCoV). We report the epidemiological, clinical, laboratory, and radiological characteristics and treatment and clinical outcomes of these patients. Methods All patients with suspected 2019-nCoV were admitted to a designated hospital in Wuhan. We prospectively collected and analysed data on patients with laboratory-confirmed 2019-nCoV infection by real-time RT-PCR and next-generation sequencing. Data were obtained with standardised data collection forms shared by WHO and the International Severe Acute Respiratory and Emerging Infection Consortium from electronic medical records. Researchers also directly communicated with patients or their families to ascertain epidemiological and symptom data. Outcomes were also compared between patients who had been admitted to the intensive care unit (ICU) and those who had not. Findings By Jan 2, 2020, 41 admitted hospital patients had been identified as having laboratory-confirmed 2019-nCoV infection. Most of the infected patients were men (30 [73%] of 41); less than half had underlying diseases (13 [32%]), including diabetes (eight [20%]), hypertension (six [15%]), and cardiovascular disease (six [15%]). Median age was 49.0 years (IQR 41.0-58.0). 27 (66%) of 41 patients had been exposed to Huanan seafood market. One family cluster was found. Common symptoms at onset of illness were fever (40 [98%] of 41 patients), cough (31 [76%]), and myalgia or fatigue (18 [44%]); less common symptoms were sputum production (11 [28%] of 39), headache (three [8%] of 38), haemoptysis (two [5%] of 39), and diarrhoea (one [3%] of 38). Dyspnoea developed in 22 (55%) of 40 patients (median time from illness onset to dyspnoea 8.0 days [IQR 5.0-13.0]). 26 (63%) of 41 patients had lymphopenia. All 41 patients had pneumonia with abnormal findings on chest CT. Complications included acute respiratory distress syndrome (12 [29%]), RNAaemia (six [15%]), acute cardiac injury (five [12%]) and secondary infection (four [10%]). 13 (32%) patients were admitted to an ICU and six (15%) died. Compared with non-ICU patients, ICU patients had higher plasma levels of IL2, IL7, IL10, GSCF, IP10, MCP1, MIP1A, and TNF alpha. Interpretation The 2019-nCoV infection caused clusters of severe respiratory illness similar to severe acute respiratory syndrome coronavirus and was associated with ICU admission and high mortality. Major gaps in our knowledge of the origin, epidemiology, duration of human transmission, and clinical spectrum of disease need fulfilment by future studies. Copyright (C) 2020 Elsevier Ltd. All rights reserved. [Huang, Chaolin; Zhang, Li; Yu, Ting; Xia, Jiaan; Wei, Yuan; Wu, Wenjuan; Xie, Xuelei] Jin Yin tan Hosp, Wuhan, Peoples R China; [Wang, Yeming; Fan, Guohui; Gu, Xiaoying; Li, Hui; Cao, Bin] China Japan Friendship Hosp, Ctr Resp Med, Natl Clin Res Ctr Resp Dis, Dept Pulm & Crit Care Med, Beijing, Peoples R China; [Fan, Guohui; Gu, Xiaoying] China Japan Friendship Hosp, Inst Clin Med Sci, Beijing, Peoples R China; [Liu, Min] China Japan Friendship Hosp, Dept Radiol, Beijing, Peoples R China; [Wang, Yeming; Fan, Guohui; Gu, Xiaoying; Li, Hui; Cao, Bin] Chinese Acad Med Sci, Inst Resp Med, Peking Union Med Coll, Beijing, Peoples R China; [Wang, Yeming; Li, Hui; Cao, Bin] Capital Med Univ, Dept Resp Med, Beijing, Peoples R China; [Li, Xingwang; Jiang, Rongmeng] Capital Med Univ, Beijing Ditan Hosp, Clin & Res Ctr Infect Dis, Beijing, Peoples R China; [Ren, Lili; Xiao, Yan; Guo, Li; Jin, Qi; Wang, Jianwei] Chinese Acad Med Sci & Peking Union Med Coll, NHC Key Lab Syst Biol Pathogens & Christophe Meri, Inst Pathogen Biol, Beijing 100730, Peoples R China; [Gao, Hong] Chinese Acad Med Sci & Peking Union Med Coll, Inst Lab Anim Sci, Beijing, Peoples R China; [Zhao, Jianping; Xie, Jungang] Huazhong Univ Sci & Technol, Tongji Med Coll, Tongji Hosp, Wuhan, Peoples R China; [Hu, Yi; Yin, Wen] Huazhong Univ Sci & Technol, Tongji Med Coll, Dept Pulm & Crit Care Med, Cent Hosp Wuhan, Wuhan, Peoples R China; [Xu, Jiuyang] Tsinghua Univ, Sch Med, Beijing, Peoples R China; [Cheng, Zhenshun] Wuhan Univ, Resp Med, Zhongnan Hosp, Wuhan, Peoples R China; [Wang, Guangfa] Peking Univ First Hosp, Dept Pulm & Crit Care Med, Beijing, Peoples R China; [Gao, Zhancheng] Peking Univ Peoples Hosp, Dept Pulm & Crit Care Med, Beijing, Peoples R China; [Cao, Bin] Tsinghua Univ Peking Univ Joint Ctr Life Sci, Beijing, Peoples R China Wang, JW (reprint author), Chinese Acad Med Sci & Peking Union Med Coll, NHC Key Lab Syst Biol Pathogens & Christophe Meri, Inst Pathogen Biol, Beijing 100730, Peoples R China.; Cao, B (reprint author), China Japan Friendship Hosp, Dept Pulm & Crit Care Med, Beijing 100029, Peoples R China. wangjw28@163.com; caobin_ben@163.com Ribeiro, Nuno/AAH-2299-2020 Ministry of Science and Technology [2020YFC0841300]; Chinese Academy of Medical Sciences (CAMS) Innovation Fund for Medical Sciences [CIFMS 2018-I2M-1-003]; National Science Grant for Distinguished Young Scholars [81425001/H0104]; National Key Research and Development Program of China [2018YFC1200102]; Beijing Science and Technology Project [Z19110700660000]; CAMS Innovation Fund for Medical Sciences [2016-I2M-1-014]; National Mega-projects for Infectious Diseases in China [2017ZX10103004, 2018ZX10305409] This work is funded by the Special Project for Emergency of the Ministry of Science and Technology (2020YFC0841300) Chinese Academy of Medical Sciences (CAMS) Innovation Fund for Medical Sciences (CIFMS 2018-I2M-1-003), a National Science Grant for Distinguished Young Scholars (81425001/H0104), the National Key Research and Development Program of China (2018YFC1200102), The Beijing Science and Technology Project (Z19110700660000), CAMS Innovation Fund for Medical Sciences (2016-I2M-1-014), and National Mega-projects for Infectious Diseases in China (2017ZX10103004 and 2018ZX10305409). 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Med. Virol. APR 2020 92 4 SI 433 440 10.1002/jmv.25682 8 Virology Virology KM6QU WOS:000514263400007 31967321 Bronze 2020-04-01 J Zhu, N; Zhang, DY; Wang, WL; Li, XW; Yang, B; Song, JD; Zhao, X; Huang, BY; Shi, WF; Lu, RJ; Niu, PH; Zhan, FX; Ma, XJ; Wang, DY; Xu, WB; Wu, GZ; Gao, GGF; Tan, WJ Zhu, Na; Zhang, Dingyu; Wang, Wenling; Li, Xingwang; Yang, Bo; Song, Jingdong; Zhao, Xiang; Huang, Baoying; Shi, Weifeng; Lu, Roujian; Niu, Peihua; Zhan, Faxian; Ma, Xuejun; Wang, Dayan; Xu, Wenbo; Wu, Guizhen; Gao, George F.; Tan, Wenjie China Novel Coronavirus A Novel Coronavirus from Patients with Pneumonia in China, 2019 NEW ENGLAND JOURNAL OF MEDICINE English Article RESPIRATORY SYNDROME; EPIDEMIOLOGY; SARS In December 2019, a cluster of patients with pneumonia of unknown cause was linked to a seafood wholesale market in Wuhan, China. A previously unknown betacoronavirus was discovered through the use of unbiased sequencing in samples from patients with pneumonia. Human airway epithelial cells were used to isolate a novel coronavirus, named 2019-nCoV, which formed a clade within the subgenus sarbecovirus, Orthocoronavirinae subfamily. Different from both MERS-CoV and SARS-CoV, 2019-nCoV is the seventh member of the family of coronaviruses that infect humans. Enhanced surveillance and further investigation are ongoing. (Funded by the National Key Research and Development Program of China and the National Major Project for Control and Prevention of Infectious Disease in China.) The authors report the emergence and isolation of a previously unknown betacoronavirus, the seventh member of the family of coronaviruses that infect humans, in Wuhan, China. Findings in three patients are described. [Zhu, Na; Wang, Wenling; Zhao, Xiang; Huang, Baoying; Lu, Roujian; Niu, Peihua; Ma, Xuejun; Wang, Dayan; Xu, Wenbo; Wu, Guizhen; Gao, George F.; Tan, Wenjie] Chinese Ctr Dis Control & Prevent, Natl Inst Viral Dis Control & Prevent, NHC Key Lab Biosafety, Beijing, Peoples R China; [Li, Xingwang] Capital Med Univ, Beijing Ditan Hosp, Dept Infect Dis, Beijing, Peoples R China; [Zhang, Dingyu] Chinese Acad Sci, Wuhan Jinyintan Hosp, Wuhan, Hubei, Peoples R China; [Yang, Bo; Zhan, Faxian] Chinese Acad Sci, Hubei Prov Ctr Dis Control & Prevent, Div Viral Dis Detect, Wuhan, Hubei, Peoples R China; [Tan, Wenjie] Chinese Acad Sci, Ctr Biosafety Mega Sci, Wuhan, Hubei, Peoples R China; [Shi, Weifeng] Shandong First Med Univ, Jinan, Shandong, Peoples R China; [Shi, Weifeng] Shandong Acad Med Sci, Jinan, Shandong, Peoples R China Wu, GZ; Tan, WJ (reprint author), China CDC, Natl Inst Viral Dis Control & Prevent, NHC Key Lab Biosafety, 155 Changbai Rd, Beijing 102206, Peoples R China.; Gao, GGF (reprint author), China CDC, Natl Inst Viral Dis Control & Prevent, Beijing 102206, Peoples R China. wugz@ivdc.chinacdc.cn; gaof@im.ac.cn; tanwj@ivdc.chinacdc.cn National Key Research and Development Program of China [2016YFD0500301]; National Major Project for Control and Prevention of Infectious Disease in China [2018ZX10101002] This work was supported by grants from the National Key Research and Development Program of China (2016YFD0500301) and the National Major Project for Control and Prevention of Infectious Disease in China (2018ZX10101002). 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In this Review, we summarize the current knowledge on the origin and evolution of these two pathogenic coronaviruses and discuss their receptor usage; we also highlight the diversity and potential of spillover of bat-borne coronaviruses, as evidenced by the recent spillover of swine acute diarrhoea syndrome coronavirus (SADS-CoV) to pigs. [Cui, Jie; Shi, Zheng-Li] Chinese Acad Sci, Wuhan Inst Virol, CAS Key Lab Special Pathogens & Biosafety, Wuhan, Hubei, Peoples R China; [Li, Fang] Univ Minnesota, Coll Vet Med, Dept Vet & Biomed Sci, St Paul, MN 55108 USA Shi, ZL (reprint author), Chinese Acad Sci, Wuhan Inst Virol, CAS Key Lab Special Pathogens & Biosafety, Wuhan, Hubei, Peoples R China. zlshi@wh.iov.cn Causey, Douglas/O-8584-2019; ?, ??/A-1013-2013 Causey, Douglas/0000-0002-4302-1771; Cui, Jie/0000-0001-8176-9951; ?, ??/0000-0001-8089-163X Strategic Priority Research Program of the Chinese Academy of SciencesChinese Academy of Sciences [XDB29010000]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China [31621061]; US National Institutes of Health (NIH) National Institute of Allergy and Infection Diseases [R01AI110964]; NIHUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USA [R01AI089728, R01AI110700]; CAS Pioneer Hundred Talents Program; Wuhan Institute of Virology (WIV) "One-Three-Five" Strategic Program [WIV-135-TP1] This work was jointly funded by the Strategic Priority Research Program of the Chinese Academy of Sciences (XDB29010000), the National Natural Science Foundation of China (31621061) and the US National Institutes of Health (NIH) National Institute of Allergy and Infection Diseases (R01AI110964) to Z.-L.S; NIH grants (R01AI089728 and R01AI110700) to F.L.; the CAS Pioneer Hundred Talents Program to J.C.; and the Wuhan Institute of Virology (WIV) "One-Three-Five" Strategic Program (WIV-135-TP1) to J.C. and Z.-L.S. 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Rev. Microbiol. MAR 2019 17 3 181 192 10.1038/s41579-018-0118-9 12 Microbiology Microbiology HL2CL WOS:000458510700009 30531947 Other Gold Y N 2020-04-01 J Chen, Y; Liu, QY; Guo, DY Chen, Yu; Liu, Qianyun; Guo, Deyin Emerging coronaviruses: Genome structure, replication, and pathogenesis JOURNAL OF MEDICAL VIROLOGY English Review coronavirus; epidemiology; pathogenesis; respiratory tract; virus classification; zoonoses RESPIRATORY SYNDROME-CORONAVIRUS; MURINE HEPATITIS-VIRUS; RNA VIRUS; IN-VITRO; SARS; PROTEIN; NSP12; DELTACORONAVIRUS; EXORIBONUCLEASE; IDENTIFICATION The recent emergence of a novel coronavirus (2019-nCoV), which is causing an outbreak of unusual viral pneumonia in patients in Wuhan, a central city in China, is another warning of the risk of CoVs posed to public health. In this minireview, we provide a brief introduction of the general features of CoVs and describe diseases caused by different CoVs in humans and animals. This review will help understand the biology and potential risk of CoVs that exist in richness in wildlife such as bats. [Chen, Yu; Liu, Qianyun] Wuhan Univ, Coll Life Sci, Modern Virol Res Ctr, State Key Lab Virol, Wuhan, Peoples R China; [Guo, Deyin] Sun Yat Sen Univ, Ctr Infect & Immun Study, Sch Med, Guangzhou 510080, Peoples R China Guo, DY (reprint author), Sun Yat Sen Univ, Ctr Infect & Immun Study, Sch Med, Guangzhou 510080, Peoples R China.; Chen, Y (reprint author), Wuhan Univ, Coll Life Sci, Modern Virol Res Ctr, Wuhan 430072, Peoples R China. chenyu@whu.edu.cn; guodeyin@mail.sysu.edu.cn China National Science and Technology Major Project [2018ZX10733403]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China [81620108020, 81672008]; Shenzhen Science and Technology Program [KQTD20180411143323605]; Guangdong Zhujiang Talents Program China National Science and Technology Major Project, Grant/Award Number: #2018ZX10733403; National Natural Science Foundation of China, Grant/Award Number: #81620108020 & #81672008; Shenzhen Science and Technology Program, Grant/Award Number: KQTD20180411143323605; 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Med. Virol. APR 2020 92 4 SI 418 423 10.1002/jmv.25681 FEB 2020 6 Virology Virology KM6QU WOS:000511535700001 31967327 Bronze 2020-04-01 J Zaher, NH; Mostafa, MI; Altaher, AY Zaher, Nashwa Hafez; Mostafa, Mohammed Ismail; Altaher, Abdullah Yousef Design, synthesis and molecular docking of novel triazole derivatives as potential CoV helicase inhibitors ACTA PHARMACEUTICA English Article triazole derivatives; anti-MERS-CoV activity; MERS-CoV helicase; docking ACUTE RESPIRATORY SYNDROME; REPLICATION INHIBITOR; CORONAVIRUS; SARS; HEPATITIS Middle East respiratory syndrome coronavirus (MERS-CoV) had emerged and spread because of the worldwide travel and inefficient healthcare provided for the infected patients in several countries. Herein we investigated the anti-MERS-CoV activity of newly synthesized sixteen halogenated triazole compounds through the inhibition of helicase activity using the FRET assay. All new compounds underwent justification for their target structures via microanalytical and spectral data. SAR studies were performed. Biological results revealed that the most potent compounds were 4-(cyclopent-1-en-3-ylamino)-5-(2-(4-iodophenyl)hydrazinyl)-4H-1,2,4-triazole-3-thiol (16) and 4-(cyclopent-1-en-3-ylamino)-5-[2-(4-chlorophenyl)hydrazinyl]-4H-1,2,4-triazole-3-thiol (12). In silico molecular docking of the most potent compounds was performed to the active binding site of MERS-CoV helicase nsp13. Molecular docking results are in agreement with experimental findings. [Zaher, Nashwa Hafez] EAEA, NCRRT, Radiat Drug Res Dept, Cairo, Egypt; [Mostafa, Mohammed Ismail] Cairo Univ, Coll Vet Med, Dept Pharmacol, Gizah, Egypt; [Altaher, Abdullah Yousef] King Faisal Univ, Coll Vet Med, Dept Physiol Biochem & Pharmacol, Al Hasa, Saudi Arabia Zaher, NH (reprint author), EAEA, NCRRT, Radiat Drug Res Dept, Cairo, Egypt. nashwazah@hotmail.com deanship of Scientific Research at King Faisal University [160002] Authors would like to express their gratitude to Egyptian Atomic Energy Authority (EAEA), National Center for Radiation Research and Technology (NCRRT), Drug Radiation Research Department, drug chemistry lab, for the accommodation of the chemical synthetic part of this work. Authors would like also to extend their sincere appreciation to the deanship of Scientific Research at King Faisal University for its funding of this research through the research Project no. 160002. 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JUN 2020 70 2 145 159 10.2478/acph-2020-0024 15 Pharmacology & Pharmacy Pharmacology & Pharmacy KD6PH WOS:000507986300002 31955138 DOAJ Gold 2020-04-01 J Hui, DS; Azhar, EI; Madani, TA; Ntoumi, F; Kock, R; Dar, O; Ippolito, G; Mchugh, TD; Memish, ZA; Drosten, C; Zumla, A; Petersen, E Hui, David S.; Azhar, Esam I.; Madani, Tariq A.; Ntoumi, Francine; Kock, Richard; Dar, Osman; Ippolito, Giuseppe; Mchugh, Timothy D.; Memish, Ziad A.; Drosten, Christian; Zumla, Alimuddin; Petersen, Eskild The continuing 2019-nCoV epidemic threat of novel coronaviruses to global health - The latest 2019 novel coronavirus outbreak in Wuhan, China INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES English Editorial Material [Hui, David S.] Chinese Univ Hong Kong, Prince Wales Hosp, Dept Med & Therapeut, Shatin, Hong Kong, Peoples R China; [Azhar, Esam I.] King Abdulaziz Univ, King Fahd Med Res Ctr, Special Infect Agents Unit, Fac Appl Med Sci, Jeddah, Saudi Arabia; [Azhar, Esam I.] King Abdulaziz Univ, Dept Med Lab Technol, Fac Appl Med Sci, Jeddah, Saudi Arabia; [Madani, Tariq A.] King Abdulaziz Univ, Dept Med, Fac Med, Jeddah, Saudi Arabia; [Ntoumi, Francine] Fdn Congolaise Rech Med, Brazzaville, Rep Congo; [Kock, Richard] Univ London, Royal Vet Coll, Hawkshead Lane, Hatfield, Herts, England; [Dar, Osman] Royal Inst Int Affairs, Chatham House Ctr Global Hlth Secur, London, England; [Ippolito, Giuseppe] Lazzaro Spallanzani Natl Inst Infect Dis IRCCS, Rome, Italy; [Mchugh, Timothy D.; Zumla, Alimuddin] UCL, Div Infect & Immun, Ctr Clin Microbiol, London, England; [Memish, Ziad A.] King Saud Med City, Minist Hlth, Res Ctr, Riyadh, Saudi Arabia; [Memish, Ziad A.] Alfaisal Univ, Coll Med, Riyadh, Saudi Arabia; [Memish, Ziad A.] Emory Univ, Rollins Sch Publ Hlth, Hubert Dept Global Hlth, Atlanta, GA 30322 USA; [Drosten, Christian] Charite Univ Med Berlin, Berlin, Germany; [Drosten, Christian] Free Univ Berlin, Berlin, Germany; [Drosten, Christian] Humboldt Univ, Berlin, Germany; [Drosten, Christian] Berlin Inst Hlth, Inst Virol, Berlin, Germany; [Drosten, Christian] German Ctr Infect Res, Associated Partner Charite, Berlin, Germany; [Zumla, Alimuddin] UCL Hosp NHS Fdn Trust, NIHR Biomed Res Ctr, London, England; [Petersen, Eskild] Minist Hlth, Directorate Gen Dis Surveillance & Control, Muscat, Oman; [Petersen, Eskild] Univ Aarhus, Inst Clin Med, Fac Hlth Sci, Aarhus, Denmark Hui, DS (reprint author), Chinese Univ Hong Kong, Prince Wales Hosp, Dept Med & Therapeut, Shatin, Hong Kong, Peoples R China. dschui@cuhk.edu.hk Ribeiro, Nuno/AAH-2299-2020; Hui, David SC/O-2754-2015; McHugh, Timothy D/AAF-7231-2020 McHugh, Timothy D/0000-0003-4658-8594; Zumla, Alimuddin/0000-0002-5111-5735 European and Developing Countries Clinical Trials Partnership the EU Horizon 2020 Framework Programme for Research and Innovation All authors have a specialist interest in emerging and reemerging pathogens. FN, RK, OD, GI, TDMc, CD and AZ are members of the Pan-African Network on Emerging and Re-emerging Infections (PANDORA-ID-NET) funded by the European and Developing Countries Clinical Trials Partnership the EU Horizon 2020 Framework Programme for Research and Innovation. AZ is a National Institutes of Health Research senior investigator. All authors declare no conflicts of interest. [Anonymous], DIS OUTBREAK NE 0208; Azhar EI, 2019, INFECT DIS CLIN N AM, V33, P891, DOI 10.1016/j.idc.2019.08.001; Hui DSC, 2019, INFECT DIS CLIN N AM, V33, P869, DOI 10.1016/j.idc.2019.07.001; Parry J, 2020, BMJ-BRIT MED J, V368, DOI 10.1136/bmj.m56; WHO, 2019, MERS SIT UPD; World Health Organization, 2019, SARS SEV AC RESP SYN; Zumla A, 2016, INT J INFECT DIS, V47, P5, DOI 10.1016/j.ijid.2016.06.012 7 24 24 229 229 ELSEVIER SCI LTD OXFORD THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, OXON, ENGLAND 1201-9712 1878-3511 INT J INFECT DIS Int. J. Infect. Dis. FEB 2020 91 264 266 10.1016/j.ijid.2020.01.009 3 Infectious Diseases Infectious Diseases KH7YW WOS:000510867100045 31953166 DOAJ Gold, Green Accepted 2020-04-01 J Chan, JFW; Kok, KH; Zhu, Z; Chu, H; To, KKW; Yuan, SF; Yuen, KY Chan, Jasper Fuk-Woo; Kok, Kin-Hang; Zhu, Zheng; Chu, Hin; To, Kelvin Kai-Wang; Yuan, Shuofeng; Yuen, Kwok-Yung Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan EMERGING MICROBES & INFECTIONS English Article Coronavirus; Wuhan; SARS; emerging; genome; respiratory; virus; bioinformatics RESPIRATORY SYNDROME CORONAVIRUS; PROTEIN; EXPRESSION A mysterious outbreak of atypical pneumonia in late 2019 was traced to a seafood wholesale market in Wuhan of China. Within a few weeks, a novel coronavirus tentatively named as 2019 novel coronavirus (2019-nCoV) was announced by the World Health Organization. We performed bioinformatics analysis on a virus genome from a patient with 2019-nCoV infection and compared it with other related coronavirus genomes. Overall, the genome of 2019-nCoV has 89% nucleotide identity with bat SARS-like-CoVZXC21 and 82% with that of human SARS-CoV. The phylogenetic trees of their orf1a/b, Spike, Envelope, Membrane and Nucleoprotein also clustered closely with those of the bat, civet and human SARS coronaviruses. However, the external subdomain of Spike's receptor binding domain of 2019-nCoV shares only 40% amino acid identity with other SARS-related coronaviruses. Remarkably, its orf3b encodes a completely novel short protein. Furthermore, its new orf8 likely encodes a secreted protein with an alpha-helix, following with a beta-sheet(s) containing six strands. Learning from the roles of civet in SARS and camel in MERS, hunting for the animal source of 2019-nCoV and its more ancestral virus would be important for understanding the origin and evolution of this novel lineage B betacoronavirus. These findings provide the basis for starting further studies on the pathogenesis, and optimizing the design of diagnostic, antiviral and vaccination strategies for this emerging infection. [Chan, Jasper Fuk-Woo; Kok, Kin-Hang; Chu, Hin; To, Kelvin Kai-Wang; Yuan, Shuofeng] Univ Hong Kong, State Key Lab Emerging Infect Dis, Pokfulam, Hong Kong, Peoples R China; [Chan, Jasper Fuk-Woo; To, Kelvin Kai-Wang; Yuen, Kwok-Yung] Univ Hong Kong, Shenzhen Hosp, Dept Clin Microbiol & Infect Control, Shenzhen, Guangdong, Peoples R China; [Chan, Jasper Fuk-Woo; Kok, Kin-Hang; Zhu, Zheng; Chu, Hin; To, Kelvin Kai-Wang; Yuan, Shuofeng; Yuen, Kwok-Yung] Univ Hong Kong, Li Ka Shing Fac Med, Dept Microbiol, Pokfulam, Hong Kong, Peoples R China; [Chan, Jasper Fuk-Woo; Kok, Kin-Hang; Chu, Hin; To, Kelvin Kai-Wang; Yuan, Shuofeng; Yuen, Kwok-Yung] Univ Hong Kong, Li Ka Shing Fac Med, Carol Yu Ctr Infect, Pokfulam, Hong Kong, Peoples R China Kok, KH (reprint author), Univ Hong Kong, State Key Lab Emerging Infect Dis, Pokfulam, Hong Kong, Peoples R China.; Yuen, KY (reprint author), Univ Hong Kong, Shenzhen Hosp, Dept Clin Microbiol & Infect Control, Shenzhen, Guangdong, Peoples R China.; Kok, KH; Yuen, KY (reprint author), Univ Hong Kong, Li Ka Shing Fac Med, Dept Microbiol, Pokfulam, Hong Kong, Peoples R China.; Kok, KH; Yuen, KY (reprint author), Univ Hong Kong, Li Ka Shing Fac Med, Carol Yu Ctr Infect, Pokfulam, Hong Kong, Peoples R China. kyyuen@hku.hk; kyyuen@hku.hk Chan, Jasper Fuk-Woo/D-8007-2013 Chan, Jasper Fuk-Woo/0000-0001-6336-6657 Respiratory Viral Research Foundation Limited; Chow Sin Lan Charity Fund Limited, Chan Yin Chuen Memorial Charitable Foundation; Hong Kong Hainan Commercial Association South China Microbiology Research Fund; Consultancy Service for Enhancing Laboratory Surveillance of Emerging Infectious Diseases and Research Capability on Antimicrobial Resistance for Department of Health of the Hong Kong Special Administrative Region Government [T11/707/15]; Research Grants Council, Hong Kong Special Administrative RegionHong Kong Research Grants Council; Sanming Project of Medicine in Shenzhen, China [SZSM201911014]; Health Commission of Guangdong Province, China This study was partly supported by the donations of Michael Seak-Kan Tong, Respiratory Viral Research Foundation Limited, Hui Ming, Hui Hoy and Chow Sin Lan Charity Fund Limited, Chan Yin Chuen Memorial Charitable Foundation, Marina Man-Wai Lee, and the Hong Kong Hainan Commercial Association South China Microbiology Research Fund; and funding from the Consultancy Service for Enhancing Laboratory Surveillance of Emerging Infectious Diseases and Research Capability on Antimicrobial Resistance for Department of Health of the Hong Kong Special Administrative Region Government; the ThemeBased Research Scheme (T11/707/15) of the Research Grants Council, Hong Kong Special Administrative Region; Sanming Project of Medicine in Shenzhen, China (No. SZSM201911014); and the High Level-Hospital Program, Health Commission of Guangdong Province, China. 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JAN 1 2020 9 1 221 236 10.1080/22221751.2020.1719902 16 Immunology; Microbiology Immunology; Microbiology KH1BL WOS:000510381600001 31987001 DOAJ Gold, Green Published 2020-04-01 J Zhang, NR; Wang, LL; Deng, XQ; Liang, RY; Su, M; He, C; Hu, LF; Su, YD; Ren, J; Yu, F; Du, LY; Jiang, SB Zhang, Naru; Wang, Lili; Deng, Xiaoqian; Liang, Ruiying; Su, Meng; He, Chen; Hu, Lanfang; Su, Yudan; Ren, Jing; Yu, Fei; Du, Lanying; Jiang, Shibo Recent advances in the detection of respiratory virus infection in humans JOURNAL OF MEDICAL VIROLOGY English Review adenovirus; coronavirus; diagnostic methods; influenza virus; respiratory syncytial virus; respiratory viral infection; rhinovirus REVERSE TRANSCRIPTION-PCR; ISOTHERMAL AMPLIFICATION ASSAY; SYNCYTIAL VIRUS; RAPID DIAGNOSIS; MOLECULAR DIAGNOSIS; CLINICAL VALIDATION; INFLUENZA; IDENTIFICATION; CLASSIFICATION; IMMUNOASSAY Respiratory tract viral infection caused by viruses or bacteria is one of the most common diseases in human worldwide, while those caused by emerging viruses, such as the novel coronavirus, 2019-nCoV that caused the pneumonia outbreak in Wuhan, China most recently, have posed great threats to global public health. Identification of the causative viral pathogens of respiratory tract viral infections is important to select an appropriate treatment, save people's lives, stop the epidemics, and avoid unnecessary use of antibiotics. Conventional diagnostic tests, such as the assays for rapid detection of antiviral antibodies or viral antigens, are widely used in many clinical laboratories. With the development of modern technologies, new diagnostic strategies, including multiplex nucleic acid amplification and microarray-based assays, are emerging. This review summarizes currently available and novel emerging diagnostic methods for the detection of common respiratory viruses, such as influenza virus, human respiratory syncytial virus, coronavirus, human adenovirus, and human rhinovirus. Multiplex assays for simultaneous detection of multiple respiratory viruses are also described. It is anticipated that such data will assist researchers and clinicians to develop appropriate diagnostic strategies for timely and effective detection of respiratory virus infections. 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APR 2020 92 4 SI 408 417 10.1002/jmv.25674 FEB 2020 10 Virology Virology KM6QU WOS:000510795900001 31944312 Bronze 2020-04-01 J Lu, RJ; Zhao, X; Li, J; Niu, PH; Yang, B; Wu, HL; Wang, WL; Song, H; Huang, BY; Zhu, N; Bi, YH; Ma, XJ; Zhan, FX; Wang, L; Hu, T; Zhou, H; Hu, ZH; Zhou, WM; Zhao, L; Chen, J; Meng, Y; Wang, J; Lin, Y; Yuan, JY; Xie, ZH; Ma, JM; Liu, WJ; Wang, DY; Xu, WB; Holmes, EC; Gao, GF; Wu, GZ; Chen, WJ; Shi, WF; Tan, WJ Lu, Roujian; Zhao, Xiang; Li, Juan; Niu, Peihua; Yang, Bo; Wu, Honglong; Wang, Wenling; Song, Hao; Huang, Baoying; Zhu, Na; Bi, Yuhai; Ma, Xuejun; Zhan, Faxian; Wang, Liang; Hu, Tao; Zhou, Hong; Hu, Zhenhong; Zhou, Weimin; Zhao, Li; Chen, Jing; Meng, Yao; Wang, Ji; Lin, Yang; Yuan, Jianying; Xie, Zhihao; Ma, Jinmin; Liu, William J.; Wang, Dayan; Xu, Wenbo; Holmes, Edward C.; Gao, George F.; Wu, Guizhen; Chen, Weijun; Shi, Weifeng; Tan, Wenjie Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding LANCET English Article MERS-COV; SARS CORONAVIRUS; DOMAIN; TOOL Background In late December, 2019, patients presenting with viral pneumonia due to an unidentified microbial agent were reported in Wuhan, China. A novel coronavirus was subsequently identified as the causative pathogen, provisionally named 2019 novel coronavirus (2019-nCoV). As of Jan 26, 2020, more than 2000 cases of 2019-nCoV infection have been confirmed, most of which involved people living in or visiting Wuhan, and human-to-human transmission has been confirmed. Methods We did next-generation sequencing of samples from bronchoalveolar lavage fluid and cultured isolates from nine inpatients, eight of whom had visited the Huanan seafood market in Wuhan. Complete and partial 2019-nCoV genome sequences were obtained from these individuals. Viral contigs were connected using Sanger sequencing to obtain the full-length genomes, with the terminal regions determined by rapid amplification of cDNA ends. Phylogenetic analysis of these 2019-nCoV genomes and those of other coronaviruses was used to determine the evolutionary history of the virus and help infer its likely origin. Homology modelling was done to explore the likely receptor-binding properties of the virus. Findings The ten genome sequences of 2019-nCoV obtained from the nine patients were extremely similar, exhibiting more than 99.98% sequence identity. Notably, 2019-nCoV was closely related (with 88% identity) to two bat-derived severe acute respiratory syndrome (SARS)-like coronaviruses, bat-SL-CoVZC45 and bat-SL-CoVZXC21, collected in 2018 in Zhoushan, eastern China, but were more distant from SARS-CoV (about 79%) and MERS-CoV (about 50%). Phylogenetic analysis revealed that 2019-nCoV fell within the subgenus Sarbecovirus of the genus Betacoronavirus, with a relatively long branch length to its closest relatives bat-SL-CoVZC45 and bat-SL-CoVZXC21, and was genetically distinct from SARS-CoV. Notably, homology modelling revealed that 2019-nCoV had a similar receptor-binding domain structure to that of SARS-CoV, despite amino acid variation at some key residues. Interpretation 2019-nCoV is sufficiently divergent from SARS-CoV to be considered a new human-infecting betacoronavirus. Although our phylogenetic analysis suggests that bats might be the original host of this virus, an animal sold at the seafood market in Wuhan might represent an intermediate host facilitating the emergence of the virus in humans. Importantly, structural analysis suggests that 2019-nCoV might be able to bind to the angiotensinconverting enzyme 2 receptor in humans. The future evolution, adaptation, and spread of this virus warrant urgent investigation. [Lu, Roujian; Zhao, Xiang; Niu, Peihua; Wang, Wenling; Huang, Baoying; Zhu, Na; Ma, Xuejun; Zhou, Weimin; Zhao, Li; Meng, Yao; Wang, Ji; Liu, William J.; Wang, Dayan; Xu, Wenbo; Gao, George F.; Wu, Guizhen; Tan, Wenjie] Chinese Ctr Dis Control & Prevent, Natl Inst Viral Dis Control & Prevent, NHC Key Lab Biosafety, Beijing 102206, Peoples R China; [Li, Juan; Zhou, Hong; Shi, Weifeng] Shandong First Med Univ & Shandong Acad Med Sci, Key Lab Etiol & Epidemiol Emerging Infect Dis Uni, Tai An 271000, Shandong, Peoples R China; [Yang, Bo; Zhan, Faxian] Hubei Prov Ctr Dis Control & Prevent, Div Viral Dis Detect, Wuhan, Peoples R China; [Wu, Honglong; Lin, Yang; Yuan, Jianying; Xie, Zhihao; Ma, Jinmin; Chen, Weijun] BGI PathoGenesis Pharmaceut Technol, Shenzhen, Peoples R China; [Song, Hao] Chinese Acad Sci, Beijing Inst Life Sci, RNIH, Beijing, Peoples R China; [Bi, Yuhai; Wang, Liang; Gao, George F.] Chinese Acad Sci, Inst Microbiol, Key Lab Pathogen Microbiol & Immunol, Beijing, Peoples R China; [Bi, Yuhai; Wang, Liang; Gao, George F.] Chinese Acad Sci, CAS TWAS Ctr Excellence Emerging Infect Dis CEEID, Ctr Influenza Res & Early Warning CASCIRE, Beijing, Peoples R China; [Hu, Zhenhong] Peoples Liberat Army Gen Hosp, Cent Theater, Wuhan, Peoples R China; [Chen, Jing; Tan, Wenjie] Wenzhou Med Univ, Minist Educ, Key Lab Lab Med, Wenzhou, Peoples R China; [Chen, Jing; Tan, Wenjie] Wenzhou Med Univ, Sch Lab Med & Life Sci, Inst Med Virol, Zhejiang Prov Key Lab Med Genet, Wenzhou, Peoples R China; [Holmes, Edward C.] Univ Sydney, Sch Life & Environm Sci, Marie Bashir Inst Infect Dis & Biosecur, Sydney, NSW, Australia; [Holmes, Edward C.] Univ Sydney, Sch Med Sci, Sydney, NSW, Australia; [Shi, Weifeng] Shandong First Med Univ, Shandong Prov Qianfoshan Hosp, Affiliated Hosp 1, Jinan, Peoples R China; [Tan, Wenjie] Chinese Acad Sci, Ctr Biosafety Mega Sci, Beijing, Peoples R China Tan, WJ (reprint author), Chinese Ctr Dis Control & Prevent, Natl Inst Viral Dis Control & Prevent, NHC Key Lab Biosafety, Beijing 102206, Peoples R China.; Shi, WF (reprint author), Shandong First Med Univ & Shandong Acad Med Sci, Key Lab Etiol & Epidemiol Emerging Infect Dis Uni, Tai An 271000, Shandong, Peoples R China. wfshi@sdfmu.edu.cn; tanwj@ivdc.chinacdc.cn National Key Research and Development Program of China; National Major Project for Control and Prevention of Infectious Disease in China; Chinese Academy of SciencesChinese Academy of Sciences; Shandong First Medical University National Key Research and Development Program of China, National Major Project for Control and Prevention of Infectious Disease in China, Chinese Academy of Sciences, Shandong First Medical University. 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Affected patients were geographically linked with a local wet market as a potential source. No data on person-to-person or nosocomial transmission have been published to date. Methods In this study, we report the epidemiological, clinical, laboratory, radiological, and microbiological findings of five patients in a family cluster who presented with unexplained pneumonia after returning to Shenzhen, Guangdong province, China, after a visit to Wuhan, and an additional family member who did not travel to Wuhan. Phylogenetic analysis of genetic sequences from these patients were done. Findings From Jan 10, 2020, we enrolled a family of six patients who travelled to Wuhan from Shenzhen between Dec 29, 2019 and Jan 4, 2020. Of six family members who travelled to Wuhan, five were identified as infected with the novel coronavirus. Additionally, one family member, who did not travel to Wuhan, became infected with the virus after several days of contact with four of the family members. None of the family members had contacts with Wuhan markets or animals, although two had visited a Wuhan hospital. Five family members (aged 36-66 years) presented with fever, upper or lower respiratory tract symptoms, or diarrhoea, or a combination of these 3-6 days after exposure. They presented to our hospital (The University of Hong Kong-Shenzhen Hospital, Shenzhen) 6-10 days after symptom onset. They and one asymptomatic child (aged 10 years) had radiological ground-glass lung opacities. Older patients (aged >60 years) had more systemic symptoms, extensive radiological ground-glass lung changes, lymphopenia, thrombocytopenia, and increased C-reactive protein and lactate dehydrogenase levels. The nasopharyngeal or throat swabs of these six patients were negative for known respiratory microbes by point-of-care multiplex RT-PCR, but five patients (four adults and the child) were RT-PCR positive for genes encoding the internal RNA-dependent RNA polymerase and surface Spike protein of this novel coronavirus, which were confirmed by Sanger sequencing. Phylogenetic analysis of these five patients' RT-PCR amplicons and two full genomes by next-generation sequencing showed that this is a novel coronavirus, which is closest to the bat severe acute respiatory syndrome (SARS)-related coronaviruses found in Chinese horseshoe bats. Interpretation Our findings are consistent with person-to-person transmission of this novel coronavirus in hospital and family settings, and the reports of infected travellers in other geographical regions. Copyright (C) 2020 Elsevier Ltd. All rights reserved. [Chan, Jasper Fuk-Woo; Yuan, Shuofeng; Kok, Kin-Hang; To, Kelvin Kai-Wang; Chu, Hin; Yip, Cyril Chik-Yan; Poon, Rosana Wing-Shan; Tsoi, Hoi-Wah; Chan, Kwok-Hung; Poon, Vincent Kwok-Man; Chan, Wan-Mui; Cai, Jian-Piao; Cheng, Vincent Chi-Chung; Chen, Honglin] Univ Hong Kong, Li Ka Shing Fac Med, Dept Microbiol,Pokfulam, State Key Lab Emerging Infect Dis,Carol Yu Ctr In, Hong Kong, Peoples R China; [Chan, Jasper Fuk-Woo; To, Kelvin Kai-Wang; Yang, Jin; Xing, Fanfan; Liu, Jieling; Lo, Simon Kam-Fai; Chen, Honglin; Yuen, Kwok-Yung] Univ Hong Kong, Shenzhen Hosp, Dept Clin Microbiol & Infect Control, Shenzhen 518009, Guangdong, Peoples R China; [Hui, Christopher Kim-Ming] Univ Hong Kong, Shenzhen Hosp, Dept Med, Shenzhen, Guangdong, Peoples R China Yuen, KY (reprint author), Univ Hong Kong, Shenzhen Hosp, Dept Clin Microbiol & Infect Control, Shenzhen 518009, Guangdong, Peoples R China. kyyuen@hku.hk Shaw Foundation Hong Kong; Michael Seak-Kan Tong; Respiratory Viral Research Foundation; Hui Ming, Hui Hoy and Chow Sin Lan Charity Fund Limited; Hong Kong Hainan Commercial Association South China Microbiology Research Fund; Sanming Project of Medicine in Shenzhen, China [SZSM201911014, SZSM201612096]; High Level-Hospital Program, Health Commission of Guangdong Province, China This study was partly supported by the Shaw Foundation Hong Kong; Michael Seak-Kan Tong; Respiratory Viral Research Foundation; Hui Ming, Hui Hoy and Chow Sin Lan Charity Fund Limited; Marina Man-Wai Lee; the Hong Kong Hainan Commercial Association South China Microbiology Research Fund; Sanming Project of Medicine in Shenzhen, China (SZSM201911014 and SZSM201612096); and the High Level-Hospital Program, Health Commission of Guangdong Province, China. Centre for Health Protection of the Hong Kong Special Administrative Region Government, 2020, CHP PROV FURTH INF C; Centre for Health Protection of the Hong Kong Special Administrative Region Government, 2019, CHP CLOS MON CLUST P; Chan JFW, 2015, CLIN MICROBIOL REV, V28, P465, DOI 10.1128/CMR.00102-14; Chan JFW, 2016, EBIOMEDICINE, V14, P112, DOI 10.1016/j.ebiom.2016.11.017; Chan KH, 2017, ADV VIROL, DOI 10.1155/2017/1324276; Che XY, 2006, CLIN INFECT DIS, V43, pE1, DOI 10.1086/504943; Che XY, 2005, J INFECT DIS, V191, P2033, DOI 10.1086/430355; Cheng VCC, 2004, CLIN INFECT DIS, V38, P467, DOI 10.1086/382681; Cheng VCC, 2007, CLIN MICROBIOL REV, V20, P660, DOI 10.1128/CMR.00023-07; Cohen J., 2020, CHINESE RES REVEAL D; Hu D, 2018, EMERG MICROBES INFEC, V7, DOI 10.1038/s41426-018-0155-5; Hung IFN, 2004, EMERG INFECT DIS, V10, P1550, DOI 10.3201/eid1009.040058; Juan D., 2020, CHINADAILY; Lau SKP, 2005, P NATL ACAD SCI USA, V102, P14040, DOI 10.1073/pnas.0506735102; Lau SKP, 2015, J VIROL, V89, P10532, DOI 10.1128/JVI.01048-15; Lau SKP, 2015, J VIROL, V89, P3076, DOI 10.1128/JVI.02420-14; Leung WK, 2003, GASTROENTEROLOGY, V125, P1011, DOI [10.1016/j.gastro.2003.08.001, 10.1053/S0016-5085(03)01215-0]; Lewandowski K, 2020, J CLIN MICROBIOL, V58, DOI 10.1128/JCM.00963-19; Li WD, 2005, SCIENCE, V310, P676, DOI 10.1126/science.1118391; Memish ZA, 2014, J INFECT DIS, V210, P1590, DOI 10.1093/infdis/jiu292; Peiris JSM, 2003, LANCET, V361, P1319, DOI 10.1016/S0140-6736(03)13077-2; Peiris JSM, 2003, LANCET, V361, P1767, DOI 10.1016/S0140-6736(03)13412-5; To KKW, 2019, CLIN MICROBIOL INFEC, V25, P372, DOI 10.1016/j.cmi.2018.06.009; To KKW, 2017, J GEN VIROL, V98, P1004, DOI 10.1099/jgv.0.000766; To KKW, 2010, J MED VIROL, V82, P1, DOI 10.1002/jmv.21664; Tse H, 2012, PLOS ONE, V7, DOI 10.1371/journal.pone.0043986; Woo PCY, 2014, VIROLOGY, V471, P117, DOI 10.1016/j.virol.2014.09.020; Woo PCY, 2012, J VIROL, V86, P3995, DOI 10.1128/JVI.06540-11; Woo PCY, 2005, J VIROL, V79, P884, DOI 10.1128/JVI.79.2.884-895.2005; Zhou J, 2017, SCI ADV, V3, DOI 10.1126/sciadv.aao4966 30 71 70 180 180 ELSEVIER SCIENCE INC NEW YORK STE 800, 230 PARK AVE, NEW YORK, NY 10169 USA 0140-6736 1474-547X LANCET Lancet FEB 15 2020 395 10223 514 523 10.1016/S0140-6736(20)30154-9 10 Medicine, General & Internal General & Internal Medicine KN1CG WOS:000514576900034 31986261 Bronze 2020-04-01 J Jiang, SB; Xia, S; Ying, TL; Lu, L Jiang, Shibo; Xia, Shuai; Ying, Tianlei; Lu, Lu A novel coronavirus (2019-nCoV) causing pneumonia-associated respiratory syndrome CELLULAR & MOLECULAR IMMUNOLOGY English Editorial Material; Early Access [Jiang, Shibo; Xia, Shuai; Ying, Tianlei; Lu, Lu] Fudan Univ, Sch Basic Med Sci, 131 Dong An Rd, Shanghai 200032, Peoples R China Jiang, SB (reprint author), Fudan Univ, Sch Basic Med Sci, 131 Dong An Rd, Shanghai 200032, Peoples R China. shibojiang@fudan.edu.cn Ribeiro, Nuno/AAH-2299-2020 Ying, Tianlei/0000-0002-9597-2843 Huang CL, 2020, LANCET, V395, P497, DOI 10.1016/S0140-6736(20)30183-5; Jiang SB, 2020, EMERG MICROBES INFEC, V9, P275, DOI 10.1080/22221751.2020.1723441; Li Qun, 2020, N Engl J Med, V382, P1199, DOI 10.1056/NEJMoa2001316 3 1 1 165 165 NATURE PUBLISHING GROUP LONDON MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND 1672-7681 2042-0226 CELL MOL IMMUNOL Cell. Mol. Immunol. 10.1038/s41423-020-0372-4 FEB 2020 1 Immunology Immunology KI3YK WOS:000511284100003 32024976 Bronze 2020-04-01 J [Anonymous] [Anonymous] COVID-19: fighting panic with information LANCET English Editorial Material Ribeiro, Nuno/AAH-2299-2020 0 0 0 162 162 ELSEVIER SCIENCE INC NEW YORK STE 800, 230 PARK AVE, NEW YORK, NY 10169 USA 0140-6736 1474-547X LANCET Lancet FEB 22 2020 395 10224 537 537 1 Medicine, General & Internal General & Internal Medicine KN5AJ WOS:000514849400006 32087777 Bronze 2020-04-01 J Chen, NS; Zhou, M; Dong, X; Qu, JM; Gong, FY; Han, Y; Qiu, Y; Wang, JL; Liu, Y; Wei, Y; Xia, JA; Yu, T; Zhang, XX; Zhang, L Chen, Nanshan; Zhou, Min; Dong, Xuan; Qu, Jieming; Gong, Fengyun; Han, Yang; Qiu, Yang; Wang, Jingli; Liu, Ying; Wei, Yuan; Xia, Jia'an; Yu, Ting; Zhang, Xinxin; Zhang, Li Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study LANCET English Article RESPIRATORY SYNDROME CORONAVIRUS; MERS; OUTBREAK; SARS; COV Background In December, 2019, a pneumonia associated with the 2019 novel coronavirus (2019-nCoV) emerged in Wuhan, China. We aimed to further clarify the epidemiological and clinical characteristics of 2019-nCoV pneumonia. Methods In this retrospective, single-centre study, we included all confirmed cases of 2019-nCoV in Wuhan Jinyintan Hospital from Jan 1 to Jan 20, 2020. Cases were confirmed by real-time RT-PCR and were analysed for epidemiological, demographic, clinical, and radiological features and laboratory data. Outcomes were followed up until Jan 25, 2020. Findings Of the 99 patients with 2019-nCoV pneumonia, 49 (49%) had a history of exposure to the Huanan seafood market. The average age of the patients was 55.5 years (SD 13.1), including 67 men and 32 women. 2019-nCoV was detected in all patients by real-time RT-PCR. 50 (51%) patients had chronic diseases. Patients had clinical manifestations of fever (82 [83%] patients), cough (81 [82%] patients), shortness of breath (31 [31%] patients), muscle ache (11 [11%] patients), confusion (nine [9%] patients), headache (eight [8%] patients), sore throat (five [5%] patients), rhinorrhoea (four [4%] patients), chest pain (two [2%] patients), diarrhoea (two [2%] patients), and nausea and vomiting (one [1%] patient). According to imaging examination, 74 (75%) patients showed bilateral pneumonia, 14 (14%) patients showed multiple mottling and ground-glass opacity, and one (1%) patient had pneu-mothorax. 17 (17%) patients developed acute respiratory distress syndrome and, among them, 11 (11%) patients worsened in a short period of time and died of multiple organ failure. Interpretation The 2019-nCoV infection was of clustering onset, is more likely to affect older males with comorbidities, and can result in severe and even fatal respiratory diseases such as acute respiratory distress syndrome. In general, characteristics of patients who died were in line with the MuLBSTA score, an early warning model for predicting mortality in viral pneumonia. Further investigation is needed to explore the applicability of the MuLBSTA score in predicting the risk of mortality in 2019-nCoV infection. Copyright (C) 2020 Elsevier Ltd. All rights reserved. [Chen, Nanshan; Dong, Xuan; Wei, Yuan; Xia, Jia'an; Yu, Ting; Zhang, Li] Wuhan Jinyintan Hosp, TB & Resp Dept, Wuhan 430023, Peoples R China; [Gong, Fengyun; Wang, Jingli] Wuhan Jinyintan Hosp, Infect Dis Dept, Wuhan, Peoples R China; [Han, Yang] Wuhan Jinyintan Hosp, Sci & Educ Dept, Wuhan, Peoples R China; [Liu, Ying] Wuhan Jinyintan Hosp, Off Drug Clin Trial Inst, Wuhan, Peoples R China; [Zhou, Min; Qu, Jieming] Shanghai Jiao Tong Univ, Sch Med, Dept Resp & Crit Care Med, Ruijin Hosp, Shanghai, Peoples R China; [Zhou, Min; Qu, Jieming] Shanghai Jiao Tong Univ, Sch Med, Inst Resp Dis, Shanghai, Peoples R China; [Zhang, Xinxin] Shanghai Jiao Tong Univ, Sch Med, Res Lab Clin Virol, Ruijin Hosp, Shanghai 200025, Peoples R China; [Zhang, Xinxin] Shanghai Jiao Tong Univ, Sch Med, Ruijin Hosp North, Shanghai 200025, Peoples R China; [Zhang, Xinxin] Shanghai Jiao Tong Univ, Sch Med, Clin Res Ctr, Ruijin Hosp North, Shanghai, Peoples R China; [Han, Yang; Qiu, Yang] Chinese Acad Sci, Wuhan Inst Virol, Ctr Biosafety Mega Sci, State Key Lab Virol, Wuhan, Peoples R China Zhang, L (reprint author), Wuhan Jinyintan Hosp, TB & Resp Dept, Wuhan 430023, Peoples R China.; Zhang, XX (reprint author), Shanghai Jiao Tong Univ, Sch Med, Res Lab Clin Virol, Ruijin Hosp, Shanghai 200025, Peoples R China.; Zhang, XX (reprint author), Shanghai Jiao Tong Univ, Sch Med, Ruijin Hosp North, Shanghai 200025, Peoples R China. zhangx@shsmu.edu.cn; zhangli080806@163.com Ribeiro, Nuno/AAH-2299-2020 National Key R&D Program of China [2017YFC1309700] This study was funded by the National Key R&D Program of China (number 2017YFC1309700). We thank all patients involved in the study. 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Previous studies have shown that some bat SARSr-CoVs have the potential to infect humans(5-7). Here we report the identification and characterization of a new coronavirus (2019-nCoV), which caused an epidemic of acute respiratory syndrome in humans in Wuhan, China. The epidemic, which started on 12 December 2019, had caused 2,794 laboratory-confirmed infections including 80 deaths by 26 January 2020. Full-length genome sequences were obtained from five patients at an early stage of the outbreak. The sequences are almost identical and share 79.6% sequence identity to SARS-CoV. Furthermore, we show that 2019-nCoV is 96% identical at the whole-genome level to a bat coronavirus. Pairwise protein sequence analysis of seven conserved non-structural proteins domains show that this virus belongs to the species of SARSr-CoV. In addition, 2019-nCoV virus isolated from the bronchoalveolar lavage fluid of a critically ill patient could be neutralized by sera from several patients. Notably, we confirmed that 2019-nCoV uses the same cell entry receptor-angiotensin converting enzyme II (ACE2)-as SARS-CoV. [Zhou, Peng; Yang, Xing-Lou; Hu, Ben; Zhang, Lei; Zhang, Wei; Si, Hao-Rui; Zhu, Yan; Li, Bei; Chen, Jing; Luo, Yun; Guo, Hua; Jiang, Ren-Di; Liu, Mei-Qin; Chen, Ying; Shen, Xu-Rui; Wang, Xi; Zheng, Xiao-Shuang; Zhao, Kai; Chen, Quan-Jiao; Deng, Fei; Yan, Bing; Wang, Yan-Yi; Xiao, Geng-Fu; Shi, Zheng-Li] Chinese Acad Sci, Wuhan Inst Virol, Ctr Biosafety Mega Sci, CAS Key Lab Special Pathogens, Wuhan, Peoples R China; [Wang, Xian-Guang; Huang, Chao-Lin; Chen, Hui-Dong] Wuhan Jin Yin Tan Hosp, Wuhan, Peoples R China; [Si, Hao-Rui; Chen, Jing; Luo, Yun; Guo, Hua; Jiang, Ren-Di; Liu, Mei-Qin; Chen, Ying; Shen, Xu-Rui; Wang, Xi; Zheng, Xiao-Shuang; Zhao, Kai] Univ Chinese Acad Sci, Beijing, Peoples R China; [Liu, Lin-Lin; Zhan, Fa-Xian] Hubei Prov Ctr Dis Control & Prevent, Wuhan, Peoples R China Shi, ZL (reprint author), Chinese Acad Sci, Wuhan Inst Virol, Ctr Biosafety Mega Sci, CAS Key Lab Special Pathogens, Wuhan, Peoples R China. zlshi@wh.iov.cn Strategic Priority Research Program of the Chinese Academy of Sciences (CAS) [XDB29010101, XDB29010104]; China Natural Science Foundation for excellent scholars [81822028, 31770175, 31800142]; Mega-Project for Infectious Disease from Minister of Science and Technology of the People's Republic of China [2018ZX10305409-004-001]; Youth innovation promotion association of CAS [2019328] We thank P. Zhang and A. Du from the WIV core facility centre for their help with producing transmission electron microscopy micrographs; H.-Z. Liu and P. Yu from WIV for bioinformatics analysis. This work was jointly supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (CAS) (XDB29010101 to Z.-L.S. and XDB29010104 to P.Z.), China Natural Science Foundation for excellent scholars (81822028 to P.Z., 31770175 to Z.-L.S. and 31800142 to B.H.), Mega-Project for Infectious Disease from Minister of Science and Technology of the People's Republic of China (2018ZX10305409-004-001 to P.Z.), Youth innovation promotion association of CAS (2019328 to X.-L.Y.). Cui J, 2019, NAT REV MICROBIOL, V17, P181, DOI 10.1038/s41579-018-0118-9; Drosten C, 2003, NEW ENGL J MED, V348, P1967, DOI 10.1056/NEJMoa030747; Fan Y, 2019, VIRUSES-BASEL, V11, DOI 10.3390/v11030210; Ge XY, 2013, NATURE, V503, P535, DOI 10.1038/nature12711; Gorbalenya A. 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Previous studies have shown that some bat SARSr-CoVs have the potential to infect humans(5-7). Here we report the identification and characterization of a new coronavirus (2019-nCoV), which caused an epidemic of acute respiratory syndrome in humans in Wuhan, China. The epidemic, which started on 12 December 2019, had caused 2,794 laboratory-confirmed infections including 80 deaths by 26 January 2020. Full-length genome sequences were obtained from five patients at an early stage of the outbreak. The sequences are almost identical and share 79.6% sequence identity to SARS-CoV. Furthermore, we show that 2019-nCoV is 96% identical at the whole-genome level to a bat coronavirus. Pairwise protein sequence analysis of seven conserved non-structural proteins domains show that this virus belongs to the species of SARSr-CoV. In addition, 2019-nCoV virus isolated from the bronchoalveolar lavage fluid of a critically ill patient could be neutralized by sera from several patients. Notably, we confirmed that 2019-nCoV uses the same cell entry receptor-angiotensin converting enzyme II (ACE2)-as SARS-CoV. Characterization of full-length genome sequences from patients infected with a new coronavirus (2019-nCoV) shows that the sequences are nearly identical and indicates that the virus is related to a bat coronavirus. [Zhou, Peng; Yang, Xing-Lou; Hu, Ben; Zhang, Lei; Zhang, Wei; Si, Hao-Rui; Zhu, Yan; Li, Bei; Chen, Jing; Luo, Yun; Guo, Hua; Jiang, Ren-Di; Liu, Mei-Qin; Chen, Ying; Shen, Xu-Rui; Wang, Xi; Zheng, Xiao-Shuang; Zhao, Kai; Chen, Quan-Jiao; Deng, Fei; Yan, Bing; Wang, Yan-Yi; Xiao, Geng-Fu; Shi, Zheng-Li] Chinese Acad Sci, Ctr Biosafety Mega Sci, Wuhan Inst Virol, CAS Key Lab Special Pathogens, Wuhan, Peoples R China; [Wang, Xian-Guang; Huang, Chao-Lin; Chen, Hui-Dong] Wuhan Jin Yin Tan Hosp, Wuhan, Peoples R China; [Si, Hao-Rui; Chen, Jing; Luo, Yun; Guo, Hua; Jiang, Ren-Di; Liu, Mei-Qin; Chen, Ying; Shen, Xu-Rui; Wang, Xi; Zheng, Xiao-Shuang; Zhao, Kai] Univ Chinese Acad Sci, Beijing, Peoples R China; [Liu, Lin-Lin; Zhan, Fa-Xian] Hubei Prov Ctr Dis Control & Prevent, Wuhan, Peoples R China Shi, ZL (reprint author), Chinese Acad Sci, Ctr Biosafety Mega Sci, Wuhan Inst Virol, CAS Key Lab Special Pathogens, Wuhan, Peoples R China. zlshi@wh.iov.cn Strategic Priority Research Program of the Chinese Academy of Sciences (CAS) [XDB29010101, XDB29010104]; China Natural Science FoundationNational Natural Science Foundation of China [81822028, 31770175, 31800142]; Mega-Project for Infectious Disease [2018ZX10305409-004-001]; Youth innovation promotion association of CAS [2019328] We thank P. Zhang and A. Du from the WIV core facility centre for their help with producing transmission electron microscopy micrographs; H.-Z. Liu and P. Yu from WIV for bioinformatics analysis. This work was jointly supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (CAS) (XDB29010101 to Z.-L.S. and XDB29010104 to P.Z.), China Natural Science Foundation for excellent scholars (81822028 to P.Z., 31770175 to Z.-L.S. and 31800142 to B.H.), Mega-Project for Infectious Disease from Minister of Science and Technology of the People's Republic of China (2018ZX10305409-004-001 to P.Z.), Youth innovation promotion association of CAS (2019328 to X.-L.Y.). Cui J, 2019, NAT REV MICROBIOL, V17, P181, DOI 10.1038/s41579-018-0118-9; Drosten C, 2003, NEW ENGL J MED, V348, P1967, DOI 10.1056/NEJMoa030747; Fan Y, 2019, VIRUSES-BASEL, V11, DOI 10.3390/v11030210; Ge XY, 2013, NATURE, V503, P535, DOI 10.1038/nature12711; Gorbalenya A. 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W.; Bleicker, Tobias; Bruenink, Sebastian; Schneider, Julia; Schmidt, Marie Luisa; Mulders, Daphne G. J. C.; Haagmans, Bart L.; van der Veer, Bas; van den Brink, Sharon; Wijsman, Lisa; Goderski, Gabriel; Romette, Jean-Louis; Ellis, Joanna; Zambon, Maria; Peiris, Malik; Goossens, Herman; Reusken, Chantal; Koopmans, Marion P. G.; Drosten, Christian Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR EUROSURVEILLANCE English Article CLASSIFICATION Background: The ongoing outbreak of the recently emerged novel coronavirus (2019-nCoV) poses a challenge for public health laboratories as virus isolates are unavailable while there is growing evidence that the outbreak is more widespread than initially thought, and international spread through travellers does already occur. Aim: We aimed to develop and deploy robust diagnostic methodology for use in public health laboratory settings without having virus material available. Methods: Here we present a validated diagnostic workflow for 2019-nCoV, its design relying on close genetic relatedness of 2019-nCoV with SARS coronavirus, making use of synthetic nucleic acid technology. Results: The workflow reliably detects 2019-nCoV, and further discriminates 2019-nCoV from SARS-CoV. Through coordination between academic and public laboratories, we confirmed assay exclusivity based on 297 original clinical specimens containing a full spectrum of human respiratory viruses. Control material is made available through European Virus Archive - Global ( EVAg), a European Union infrastructure project. Conclusion: The present study demonstrates the enormous response capacity achieved through coordination of academic and public laboratories in national and European research networks. [Corman, Victor M.; Bleicker, Tobias; Bruenink, Sebastian; Schneider, Julia; Schmidt, Marie Luisa; Drosten, Christian] Charite Univ Med Berlin, Inst Virol, Berlin, Germany; [Corman, Victor M.; Bleicker, Tobias; Bruenink, Sebastian; Schneider, Julia; Schmidt, Marie Luisa; Drosten, Christian] German Ctr Infect Res DZIF, Berlin, Germany; [Landt, Olfert; Kaiser, Marco] Tib Molbiol, Berlin, Germany; [Molenkamp, Richard; Mulders, Daphne G. J. C.; Haagmans, Bart L.; Koopmans, Marion P. G.] Erasmus MC, Dept Virosci, Rotterdam, Netherlands; [Meijer, Adam; van der Veer, Bas; van den Brink, Sharon; Wijsman, Lisa; Goderski, Gabriel; Reusken, Chantal] Natl Inst Publ Hlth & Environm RIVM, Bilthoven, Netherlands; [Peiris, Malik] Univ Hong Kong, Hong Kong, Peoples R China; [Romette, Jean-Louis] Univ Aix Marseille, Marseille, France; [Ellis, Joanna; Zambon, Maria] Publ Hlth England, London, England; [Goossens, Herman] Univ Antwerp, Vaccine & Infect Dis Inst, Dept Med Microbiol, Antwerp, Belgium Drosten, C (reprint author), Charite Univ Med Berlin, Inst Virol, Berlin, Germany.; Drosten, C (reprint author), German Ctr Infect Res DZIF, Berlin, Germany. christian.drosten@charite.de Ribeiro, Nuno/AAH-2299-2020; Corman, Victor Max/K-1319-2019 Corman, Victor Max/0000-0002-3605-0136; Haagmans, Bart/0000-0001-6221-2015 European Union DG Research through project Prepare [GA602525]; European Union DG Research through project Compare [GA643476]; European Union DG Research through project EVAg [GA653316]; European Union DG SANCO through EVD-LabNet; German Ministry of Research through project RAPID [01KI1723A]; German Ministry of Research through project DZIF [301-4-7-01.703] This work was funded by European Union DG Research through projects Prepare (GA602525), Compare (GA643476), and EVAg (GA653316); by European Union DG SANCO through EVD-LabNet, as well as by the German Ministry of Research through projects RAPID (01KI1723A) and DZIF (301-4-7-01.703). 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Med. Virol. APR 2020 92 4 SI 401 402 10.1002/jmv.25678 FEB 2020 2 Virology Virology KM6QU WOS:000512726300001 31950516 Bronze 2020-04-01 J Wang, WE; Tang, JM; Wei, FQ Wang, Weier; Tang, Jianming; Wei, Fangqiang Updated understanding of the outbreak of 2019 novel coronavirus (2019-nCoV) in Wuhan, China JOURNAL OF MEDICAL VIROLOGY English Article coronavirus; epidemiology; infection RESPIRATORY SYNDROME; SARS To help health workers and the public recognize and deal with the 2019 novel coronavirus (2019-nCoV) quickly, effectively, and calmly with an updated understanding. A comprehensive search from Chinese and worldwide official websites and announcements was performed between 1 December 2019 and 9:30 am 26 January 2020 (Beijing time). A latest summary of 2019-nCoV and the current outbreak was drawn. Up to 24 pm, 25 January 2020, a total of 1975 cases of 2019-nCoV infection were confirmed in mainland China with a total of 56 deaths having occurred. The latest mortality was approximately 2.84% with a total of 2684 cases still suspected. The China National Health Commission reported the details of the first 17 deaths up to 24 pm, 22 January 2020. The deaths included 13 males and 4 females. The median age of the people who died was 75 (range 48-89) years. Fever (64.7%) and cough (52.9%) were the most common first symptoms among those who died. The median number of days from the occurence of the first symptom to death was 14.0 (range 6-41) days, and it tended to be shorter among people aged 70 years or more (11.5 [range 6-19] days) than those aged less than 70 years (20 [range 10-41] days; P = .033). The 2019-nCoV infection is spreading and its incidence is increasing nationwide. The first deaths occurred mostly in elderly people, among whom the disease might progress faster. The public should still be cautious in dealing with the virus and pay more attention to protecting the elderly people from the virus. 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APR 2020 92 4 SI 441 447 10.1002/jmv.25689 FEB 2020 7 Virology Virology KM6QU WOS:000512727900001 31994742 Bronze 2020-04-01 J Wang, ML; Cao, RY; Zhang, LK; Yang, XL; Liu, J; Xu, MY; Shi, ZL; Hu, ZH; Zhong, W; Xiao, GF Wang, Manli; Cao, Ruiyuan; Zhang, Leike; Yang, Xinglou; Liu, Jia; Xu, Mingyue; Shi, Zhengli; Hu, Zhihong; Zhong, Wu; Xiao, Gengfu Remdesivir and chloroquine effectively inhibit the recently emerged novel coronavirus (2019-nCoV) in vitro CELL RESEARCH English Letter VIRUS-INFECTION; EBOLA-VIRUS [Wang, Manli; Zhang, Leike; Yang, Xinglou; Liu, Jia; Xu, Mingyue; Shi, Zhengli; Hu, Zhihong; Xiao, Gengfu] Chinese Acad Sci, Wuhan Inst Virol, Ctr Biosafety Mega Sci, State Key Lab Virol, Wuhan 430071, Peoples R China; [Cao, Ruiyuan; Zhong, Wu] Beijing Inst Pharmacol & Toxicol, Natl Engn Res Ctr Emergency Drug, Beijing 100850, Peoples R China Hu, ZH; Xiao, GF (reprint author), Chinese Acad Sci, Wuhan Inst Virol, Ctr Biosafety Mega Sci, State Key Lab Virol, Wuhan 430071, Peoples R China.; Zhong, W (reprint author), Beijing Inst Pharmacol & Toxicol, Natl Engn Res Ctr Emergency Drug, Beijing 100850, Peoples R China. huzh@wh.iov.cn; zhongwu@bmi.ac.cn; xiaogf@wh.iov.cn Ribeiro, Nuno/AAH-2299-2020 Hu, Zhihong/0000-0002-1560-0928 National Science and Technology Major Projects for "Major New Drugs Innovation and Development" [2018ZX09711003]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China [31621061]; Emergency Scientific Research Project for 2019-nCoV from Hubei Province We thank Xi Wang, Yan Wu, Weijuan Shang, Huanyu Zhang, Yufeng Li, Hengrui Hu, Xiaming Jiang, Yuan Sun, from Wuhan Institute of Virology for their essential assistance with this study. We thank Prof. Fei Deng from National Virus Resource Center, and Tao Du, Jia Wu and Hao Tang from BSL-3 Laboratory of Wuhan Institute of Virology for their critical support. We thank Prof. Yanyi Wang and other colleagues of Wuhan Institute of Virology and Wuhan National Biosafety Laboratory for their excellent coordination. We thank Dr. Basil Arif for scientific editing of the manuscript. We thank the anonymous reviewers for their valuable suggestions. This work was supported in part by grants from the National Science and Technology Major Projects for "Major New Drugs Innovation and Development" (directed by Prof. Song Li) (2018ZX09711003), the National Natural Science Foundation of China (31621061), and the Emergency Scientific Research Project for 2019-nCoV from Hubei Province (to Profs. Zhengli Shi and Gengfu Xiao). 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MAR 2020 30 3 269 271 10.1038/s41422-020-0282-0 FEB 2020 3 Cell Biology Cell Biology KS3GF WOS:000511096100001 32020029 Green Published, Other Gold 2020-04-01 J Han, WZ; Quan, B; Guo, Y; Zhang, J; Lu, Y; Feng, G; Wu, QW; Fang, F; Cheng, L; Jiao, NL; Li, XN; Chen, Q Han, Wenzheng; Quan, Bin; Guo, Yi; Zhang, Jun; Lu, Yong; Feng, Gang; Wu, Qiwen; Fang, Fang; Cheng, Long; Jiao, Nanlin; Li, Xiaoning; Chen, Qing The course of clinical diagnosis and treatment of a case infected with coronavirus disease 2019 JOURNAL OF MEDICAL VIROLOGY English Letter COVID-19; lopinavir and ritonavir tablets; SARS-CoV-2; severe respiratory syndrome [Han, Wenzheng; Feng, Gang; Wu, Qiwen; Fang, Fang; Cheng, Long; Li, Xiaoning] Wanan Med Coll, Dept Clin Lab, Affiliated Hosp 1, Zheshan West Rd, Wuhu 241001, Anhui, Peoples R China; [Quan, Bin] Wanan Med Coll, Dept Infect Dis, Affiliated Hosp 1, Wuhu, Anhui, Peoples R China; [Guo, Yi] Wanan Med Coll, Dept Gynaecol & Obstet, Affiliated Hosp 1, Wuhu, Anhui, Peoples R China; [Zhang, Jun] Wanan Med Coll, Dept Clin Blood Lab, Affiliated Hosp 1, Wuhu, Anhui, Peoples R China; [Lu, Yong] Wanan Med Coll, Sch Lab Med, Dept Med Lab Sci, Wuhu, Anhui, Peoples R China; [Jiao, Nanlin] Wanan Med Coll, Dept Pathol, Affiliated Hosp 1, Wuhu, Anhui, Peoples R China; [Chen, Qing] Wanan Med Coll, Dept Nucl Med, Affiliated Hosp 1, Zheshan West Rd, Wuhu 241001, Anhui, Peoples R China Li, XN (reprint author), Wanan Med Coll, Dept Clin Lab, Affiliated Hosp 1, Zheshan West Rd, Wuhu 241001, Anhui, Peoples R China.; Chen, Q (reprint author), Wanan Med Coll, Dept Nucl Med, Affiliated Hosp 1, Zheshan West Rd, Wuhu 241001, Anhui, Peoples R China. lixiaoning19702006@126.com; 11418163@zju.edu.cn Natural Science Foundation of Anhui ProvinceNatural Science Foundation of Anhui Province [1908085QH325]; Natural science research project of universities in Anhui Province [KJ2017A260] This work was supported by the Natural Science Foundation of Anhui Province (no. 1908085QH325) and the Natural science research project of universities in Anhui Province (no. 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MAY 2020 92 5 461 463 10.1002/jmv.25711 MAR 2020 3 Virology Virology KU3AY WOS:000517096300001 32073161 Bronze 2020-04-01 J Benvenuto, D; Giovanetti, M; Ciccozzi, A; Spoto, S; Angeletti, S; Ciccozzi, M Benvenuto, Domenico; Giovanetti, Marta; Ciccozzi, Alessandra; Spoto, Silvia; Angeletti, Silvia; Ciccozzi, Massimo The 2019-new coronavirus epidemic: Evidence for virus evolution JOURNAL OF MEDICAL VIROLOGY English Article coronavirus; epidemiology; macromolecular design; SARS coronavirus There is a worldwide concern about the new coronavirus 2019-nCoV as a global public health threat. In this article, we provide a preliminary evolutionary and molecular epidemiological analysis of this new virus. A phylogenetic tree has been built using the 15 available whole genome sequences of 2019-nCoV, 12 whole genome sequences of 2019-nCoV, and 12 highly similar whole genome sequences available in gene bank (five from the severe acute respiratory syndrome, two from Middle East respiratory syndrome, and five from bat SARS-like coronavirus). Fast unconstrained Bayesian approximation analysis shows that the nucleocapsid and the spike glycoprotein have some sites under positive pressure, whereas homology modeling revealed some molecular and structural differences between the viruses. The phylogenetic tree showed that 2019-nCoV significantly clustered with bat SARS-like coronavirus sequence isolated in 2015, whereas structural analysis revealed mutation in Spike Glycoprotein and nucleocapsid protein. From these results, the new 2019-nCoV is distinct from SARS virus, probably trasmitted from bats after mutation conferring ability to infect humans. [Benvenuto, Domenico; Ciccozzi, Alessandra] Univ Campus Biomed Rome, Unit Med Stat & Mol Epidemiol, Rome, Italy; [Giovanetti, Marta; Ciccozzi, Massimo] Fundacao Oswaldo Cruz, Inst Oswaldo Cruz, Lab Flavivirus, Rio De Janeiro, Brazil; [Spoto, Silvia] Univ Campus Biomed Rome, Internal Med Unit, Rome, Italy; [Angeletti, Silvia] Univ Campus Biomed Rome, Unit Clin Lab Sci, I-00128 Rome, Italy Angeletti, S (reprint author), Univ Campus Biomed Rome, Unit Clin Lab Sci, I-00128 Rome, Italy. s.angeletti@unicampus.it ; ciccozzi, massimo/C-6484-2016 Benvenuto, Domenico/0000-0003-3833-2927; ciccozzi, massimo/0000-0003-3866-9239 Benkert P, 2009, NUCLEIC ACIDS RES, V37, pW510, DOI 10.1093/nar/gkp322; Chakraborty S, 2017, GENE, V604, P48, DOI 10.1016/j.gene.2016.11.023; Chan JFW, 2020, LANCET, V395, P514, DOI 10.1016/S0140-6736(20)30154-9; Chen Y, 2020, J MED VIROL, V92, P418, DOI 10.1002/jmv.25681; Darriba D, 2012, NAT METHODS, V9, P772, DOI 10.1038/nmeth.2109; Drosten C, 2003, NEW ENGL J MED, V348, P1967, DOI 10.1056/NEJMoa030747; Hall T.A., 1999, NUCL ACIDS S SER, V41, P95, DOI DOI 10.1021/BK-1999-0734.CH008; Huang CL, 2020, LANCET, V395, P497, DOI 10.1016/S0140-6736(20)30183-5; Hui DS, 2020, INT J INFECT DIS, V91, P264, DOI 10.1016/j.ijid.2020.01.009; Ji W, 2020, J MED VIROL, V92, P433, DOI 10.1002/jmv.25682; Katoh K, 2019, BRIEF BIOINFORM, V20, P1160, DOI 10.1093/bib/bbx108; Kumar S, 2018, MOL BIOL EVOL, V35, P1547, DOI 10.1093/molbev/msy096; Lu HZ, 2020, J MED VIROL, V92, P401, DOI 10.1002/jmv.25678; Murrell B, 2013, MOL BIOL EVOL, V30, P1196, DOI 10.1093/molbev/mst030; Murrell B, 2012, PLOS GENET, V8, DOI 10.1371/journal.pgen.1002764; Schrodinger LLC, 2015, PYMOL MOL GRAPH SYST; Waterhouse A, 2018, NUCLEIC ACIDS RES, V46, pW296, DOI 10.1093/nar/gky427; Zhu N, 2020, NEW ENGL J MED, V382, P727, DOI 10.1056/NEJMoa2001017; Zimmermann L, 2018, J MOL BIOL, V430, P2237, DOI 10.1016/j.jmb.2017.12.007 19 4 4 116 116 WILEY HOBOKEN 111 RIVER ST, HOBOKEN 07030-5774, NJ USA 0146-6615 1096-9071 J MED VIROL J. Med. Virol. APR 2020 92 4 SI 455 459 10.1002/jmv.25688 FEB 2020 5 Virology Virology KM6QU WOS:000511536300001 31994738 Bronze 2020-04-01 J Dey, SK; Rahman, MM; Siddiqi, UR; Howlader, A Dey, Samrat K.; Rahman, Md. Mahbubur; Siddiqi, Umme R.; Howlader, Arpita Analyzing the epidemiological outbreak of COVID-19: A visual exploratory data analysis approach JOURNAL OF MEDICAL VIROLOGY English Article; Early Access China; coronavirus; COVID-19; data analysis; SARS-CoV-2; visualization There is an obvious concern globally regarding the fact about the emerging coronavirus 2019 novel coronavirus (2019-nCoV) as a worldwide public health threat. As the outbreak of COVID-19 causes by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) progresses within China and beyond, rapidly available epidemiological data are needed to guide strategies for situational awareness and intervention. The recent outbreak of pneumonia in Wuhan, China, caused by the SARS-CoV-2 emphasizes the importance of analyzing the epidemiological data of this novel virus and predicting their risks of infecting people all around the globe. In this study, we present an effort to compile and analyze epidemiological outbreak information on COVID-19 based on the several open datasets on 2019-nCoV provided by the Johns Hopkins University, World Health Organization, Chinese Center for Disease Control and Prevention, National Health Commission, and DXY. An exploratory data analysis with visualizations has been made to understand the number of different cases reported (confirmed, death, and recovered) in different provinces of China and outside of China. Overall, at the outset of an outbreak like this, it is highly important to readily provide information to begin the evaluation necessary to understand the risks and begin containment activities. [Dey, Samrat K.] DIU, Dept Comp Sci & Engn, Dhaka 1205, Bangladesh; [Rahman, Md. Mahbubur] MIST, Dept Comp Sci & Engn, Dhaka, Bangladesh; [Siddiqi, Umme R.] Shaheed Suhrawardy Med Coll ShSMC, Dept Physiol, Dhaka, Bangladesh; [Howlader, Arpita] PSTU, Dept Comp & Commun Engn, Dumki, Bangladesh Dey, SK (reprint author), DIU, Dept Comp Sci & Engn, Dhaka 1205, Bangladesh. sopnil.samrat@gmail.com Dey, Samrat Kumar/0000-0002-7999-8576 Centers for Disease Control and Prevention, 2019, 2019 NOV COR 2019 NC; Chen Y, 2020, J MED VIROL, V92, P418, DOI 10.1002/jmv.25681; Drosten C, 2003, NEW ENGL J MED, V348, P1967, DOI 10.1056/NEJMoa030747; Gorbalenya AE, 2020, ACUTE RESP SYNDROME, DOI [10.1101/2020.02.07.937862, DOI 10.1101/2020.02.07.937862]; Hui DS, 2020, INT J INFECT DIS, V91, P264, DOI 10.1016/j.ijid.2020.01.009; Ji W, 2020, J MED VIROL, V92, P433, DOI 10.1002/jmv.25682; Lauren G, 2020, CORONAVIRUS COVID 19; Lu HZ, 2020, J MED VIROL, V92, P401, DOI 10.1002/jmv.25678; World Health Organization, 2020, NOV COR CHIN; Yoo JH, 2020, J KOREAN MED SCI, V35, DOI 10.3346/jkms.2020.35.e56; Zhu N, 2020, NEW ENGL J MED, V382, P727, DOI 10.1056/NEJMoa2001017 11 1 1 108 108 WILEY HOBOKEN 111 RIVER ST, HOBOKEN 07030-5774, NJ USA 0146-6615 1096-9071 J MED VIROL J. Med. Virol. 10.1002/jmv.25743 MAR 2020 7 Virology Virology KT5ZV WOS:000519094100001 32124990 Bronze 2020-04-01 J Heymann, DL; Shindo, N; Bedford, J; Enria, D; Giesecke, J; Heymann, D; Ihekweazu, C; Kobinger, G; Lane, C; Memish, Z; Myoung-don, O; Sall, AA; Ungchusak, K; Wieler, L Heymann, David L.; Shindo, Nahoko; Bedford, Juliet; Enria, Delia; Giesecke, Johan; Heymann, David; Ihekweazu, Chikwe; Kobinger, Gary; Lane, Clifford; Memish, Ziad; Myoung-don, Oh; Sall, Amadou Alpha; Ungchusak, Kum; Wieler, Lothar WHO Sci Tech Advisory Grp Infect COVID-19: what is next for public health? LANCET English Editorial Material [Heymann, David L.] London Sch Hyg &Trop Med, Infect Dis Epidemiol, London WC1E 7HT, England; [Shindo, Nahoko] WHO, Geneva, Switzerland; [Giesecke, Johan] Karolinska Inst, Stockholm, Sweden; [Ihekweazu, Chikwe] Nigeria Ctr Dis Control, Abuja, Nigeria; [Kobinger, Gary] Univ Laval, Infect Dis Res Ctr, Fac Med, Quebec City, PQ, Canada; [Lane, Clifford] NIAID, 9000 Rockville Pike, Bethesda, MD 20892 USA; [Memish, Ziad] Alfaisal Univ, Riyadh, Saudi Arabia; [Myoung-don, Oh] Seoul Natl Univ Hosp, JW Lee Ctr Global Med, SNU Coll Med, Dept Internal Med, Seoul, South Korea; [Sall, Amadou Alpha] Inst Pasteur, Unite Arbovirus & Virus Fievres Hemorrag, Dakar, Senegal; [Ungchusak, Kum] Minist Hlth, Dept Dis Control, Bangkok, Thailand; [Wieler, Lothar] Robert Koch Inst, Berlin, Germany Heymann, DL (reprint author), London Sch Hyg &Trop Med, Infect Dis Epidemiol, London WC1E 7HT, England. david.heymann@lshtm.ac.uk Ribeiro, Nuno/AAH-2299-2020 World Health OrganizationWorld Health Organization [001] Chan JFW, 2020, LANCET, V395, P514, DOI 10.1016/S0140-6736(20)30154-9; European Centre for Disease Prevention and Control, 2016, SEV AC RESP SYNDR AN; Lee SH, 2003, J EPIDEMIOL COMMUN H, V57, P652, DOI 10.1136/jech.57.9.652; Lu RJ, 2020, LANCET, V395, P565, DOI 10.1016/S0140-6736(20)30251-8; Peiris JSM, 2003, NEW ENGL J MED, V349, P2431, DOI 10.1056/NEJMra032498; WHO, 2003, DIS OUTBR NEWS AC RE; WHO, 2003, SARS UPD 84 CAN SARS; WHO, 2020, DIS OUTBREAK NE 0208; WHO, DIS OUTBR NEWS SEV A; World Health Organization, 2020, GLOB SURV HUM INF NO 10 3 3 103 103 ELSEVIER SCIENCE INC NEW YORK STE 800, 230 PARK AVE, NEW YORK, NY 10169 USA 0140-6736 1474-547X LANCET Lancet FEB 22 2020 395 10224 542 545 10.1016/S0140-6736(20)30374-3 4 Medicine, General & Internal General & Internal Medicine KN5AJ WOS:000514849400011 32061313 Bronze 2020-04-01 J Chen, LJ; Liu, WY; Zhang, Q; Xu, K; Ye, GM; Wu, WC; Sun, ZY; Liu, F; Wu, KL; Zhong, B; Mei, Y; Zhang, WX; Chen, Y; Li, YR; Shi, M; Lan, K; Liu, YL Chen, Liangjun; Liu, Weiyong; Zhang, Qi; Xu, Ke; Ye, Guangming; Wu, Weichen; Sun, Ziyong; Liu, Fang; Wu, Kailang; Zhong, Bo; Mei, Yi; Zhang, Wenxia; Chen, Yu; Li, Yirong; Shi, Mang; Lan, Ke; Liu, Yingle RNA based mNGS approach identifies a novel human coronavirus from two individual pneumonia cases in 2019 Wuhan outbreak EMERGING MICROBES & INFECTIONS English Article 2019-nCoV; Wuhan pneumonia; metagenomic next-generation sequencing; phylogenetic analyses; virus evolution From December 2019, an outbreak of unusual pneumonia was reported in Wuhan with many cases linked to Huanan Seafood Market that sells seafood as well as live exotic animals. We investigated two patients who developed acute respiratory syndromes after independent contact history with this market. The two patients shared common clinical features including fever, cough, and multiple ground-glass opacities in the bilateral lung field with patchy infiltration. Here, we highlight the use of a low-input metagenomic next-generation sequencing (mNGS) approach on RNA extracted from bronchoalveolar lavage fluid (BALF). It rapidly identified a novel coronavirus (named 2019-nCoV according to World Health Organization announcement) which was the sole pathogens in the sample with very high abundance level (1.5% and 0.62% of total RNA sequenced). The entire viral genome is 29,881 nt in length (GenBank MN988668 and MN988669, Sequence Read Archive database Bioproject accession PRJNA601736) and is classified into beta-coronavirus genus. Phylogenetic analysis indicates that 2019-nCoV is close to coronaviruses (CoVs) circulating in Rhinolophus (Horseshoe bats), such as 98.7% nucleotide identity to partial RdRp gene of bat coronavirus strain BtCoV/4991 (GenBank KP876546, 370 nt sequence of RdRp and lack of other genome sequence) and 87.9% nucleotide identity to bat coronavirus strain bat-SL-CoVZC45 and bat-SL-CoVZXC21. Evolutionary analysis based on ORF1a/1b, S, and N genes also suggests 2019-nCoV is more likely a novel CoV independently introduced from animals to humans. [Chen, Liangjun; Zhang, Qi; Xu, Ke; Liu, Fang; Wu, Kailang; Zhong, Bo; Mei, Yi; Zhang, Wenxia; Chen, Yu; Lan, Ke; Liu, Yingle] Wuhan Univ, Coll Life Sci, Modern Virol Res Ctr, State Key Lab Virol, Wuhan, Peoples R China; [Chen, Liangjun; Ye, Guangming; Li, Yirong] Wuhan Univ, Dept Lab Med, Zhongnan Hosp, Wuhan, Peoples R China; [Liu, Weiyong; Sun, Ziyong] Huazhong Univ Sci & Technol, Tongji Med Coll, Tongji Hosp, Dept Lab Med, Wuhan, Peoples R China; [Wu, Weichen; Shi, Mang] Sun Yat Sen Univ, Sch Med, Guangzhou, Peoples R China Chen, Y; Lan, K; Liu, YL (reprint author), Wuhan Univ, Coll Life Sci, Modern Virol Res Ctr, State Key Lab Virol, Wuhan, Peoples R China.; Li, YR (reprint author), Wuhan Univ, Dept Lab Med, Zhongnan Hosp, Wuhan, Peoples R China.; Shi, M (reprint author), Sun Yat Sen Univ, Sch Med, Guangzhou, Peoples R China. chenyu@whu.edu.cn; liyirong838@163.com; shim23@mail.sysu.edu.cn; klan@whu.edu.cn; mvlwu@whu.edu.cn National Mega Project on Major Infectious Disease Prevention [2017ZX10103005]; National Key Research and Development Program of China [2018YFE0204500]; National Science and Technology Major Project [2018ZX10733403] This work was supported by the National Mega Project on Major Infectious Disease Prevention under [grant number 2017ZX10103005]; National Key Research and Development Program of China under [grant number 2018YFE0204500]; and National Science and Technology Major Project under [grant number 2018ZX10733403]. 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Microbes Infect. JAN 1 2020 9 1 313 319 10.1080/22221751.2020.1725399 7 Immunology; Microbiology Immunology; Microbiology KK1XQ WOS:000512543700001 32020836 DOAJ Gold, Green Published 2020-04-01 J Gralinski, LE; Menachery, VD Gralinski, Lisa E.; Menachery, Vineet D. Return of the Coronavirus: 2019-nCoV VIRUSES-BASEL English Article 2019-nCoV; novel CoV; emerging viruses; Wuhan; Wuhan pneumonia; coronavirus; emerging viruses; SARS-CoV; MERS-CoV RESPIRATORY-SYNDROME CORONAVIRUS; SARS; MERS; INFECTION; RECEPTOR; RHESUS; TRACT The emergence of a novel coronavirus (2019-nCoV) has awakened the echoes of SARS-CoV from nearly two decades ago. Yet, with technological advances and important lessons gained from previous outbreaks, perhaps the world is better equipped to deal with the most recent emergent group 2B coronavirus. [Gralinski, Lisa E.] Univ N Carolina, Gillings Sch Global Publ Hlth, Dept Epidemiol, Chapel Hill, NC 27514 USA; [Menachery, Vineet D.] Univ Texas Med Branch, Dept Microbiol & Immunol, Galveston, TX 77555 USA; [Menachery, Vineet D.] Univ Texas Med Branch, Inst Human Infect & Immun, Galveston, TX 77555 USA Menachery, VD (reprint author), Univ Texas Med Branch, Dept Microbiol & Immunol, Galveston, TX 77555 USA.; Menachery, VD (reprint author), Univ Texas Med Branch, Inst Human Infect & Immun, Galveston, TX 77555 USA. lgralins@email.unc.edu; Vimenach@utmb.edu Ribeiro, Nuno/AAH-2299-2020 Menachery, Vineet/0000-0001-8803-7606 Al-Tawfiq JA, 2019, TRAVEL MED INFECT DI, V27, P27, DOI 10.1016/j.tmaid.2018.12.003; [Anonymous], STRAITS TIMES; Anthony SJ, 2017, MBIO, V8, DOI [10.1128/mBio.00373-17, 10.1128/mbio.00373-17]; Assiri A, 2013, LANCET INFECT DIS, V13, P752, DOI 10.1016/S1473-3099(13)70204-4; Azhar EI, 2014, NEW ENGL J MED, V370, P2499, DOI 10.1056/NEJMoa1401505; Becker MM, 2008, P NATL ACAD SCI USA, V105, P19944, DOI 10.1073/pnas.0808116105; Bedford T., GENOMIC EPIDEMIOLOGY; CIDRAP, MERS COV; CIDRAP, SARS SEV AC RESP SYN; Cockrell AS, 2014, J VIROL, V88, P5195, DOI 10.1128/JVI.03764-13; de Wit E, 2013, P NATL ACAD SCI USA, V110, P16598, DOI 10.1073/pnas.1310744110; Fehr AR, 2017, ANNU REV MED, V68, P387, DOI 10.1146/annurev-med-051215-031152; Hung IFN, 2004, EMERG INFECT DIS, V10, P1550, DOI 10.3201/eid1009.040058; Imai Natsuko, ESTIMATING POTENTIAL; Ji W, 2020, J MED VIROL; Kahn N., 2020, WALL STREET J; Kan B, 2005, J VIROL, V79, P11892, DOI 10.1128/JVI.79.18.11892-11900.2005; Kuiken T, 2003, LANCET, V362, P263, DOI 10.1016/S0140-6736(03)13967-0; Lau SKP, 2005, P NATL ACAD SCI USA, V102, P14040, DOI 10.1073/pnas.0506735102; Letko MMV, 2020, FUNCTIONAL ASSESSMEN; Li WH, 2007, VIROLOGY, V367, P367, DOI 10.1016/j.virol.2007.04.035; McAuliffe J, 2004, VIROLOGY, V330, P8, DOI 10.1016/j.virol.2004.09.030; Menachery VD, 2017, CURR OPIN VIROL, V23, P1, DOI 10.1016/j.coviro.2017.01.002; Menachery VD, 2016, P NATL ACAD SCI USA, V113, P3048, DOI 10.1073/pnas.1517719113; Menachery VD, 2015, NAT MED, V21, P1508, DOI 10.1038/nm.3985; Park D, 2016, CSH MOL CASE STUD, V2, DOI 10.1101/mcs.a001214; Quan PL, 2010, MBIO, V1, DOI 10.1128/mBio.00208-10; Rahman A, 2019, AM J PUBLIC HEALTH, V109, P1288, DOI [10.21, 10.2105/AJPH.2019.305186]; Rambaut A, 2020, PRELIMINARY PHYLOGEN; Rivers TM, 1937, J BACTERIOL, V33, P1; Roberts A, 2007, PLOS PATHOG, V3, P23, DOI 10.1371/journal.ppat.0030005; Robertson D., NCOVS RELATIONSHIP B; Shi Z.-L., 2020, DISCOVERY NOVEL CORO; Stein RA, 2011, INT J INFECT DIS, V15, pE510, DOI 10.1016/j.ijid.2010.06.020; van Doremalen N, 2014, J VIROL, V88, P9220, DOI 10.1128/JVI.00676-14; Virological.org, NOV 2019 COR GEN; Wang N, 2018, VIROL SIN, V33, P104, DOI 10.1007/s12250-018-0012-7; Wen X., 15 MED STAFF WUHAN C; Wong G, 2015, CELL HOST MICROBE, V18, P398, DOI 10.1016/j.chom.2015.09.013; World Health Organization, LAB TEST 2019 NOV CO; World Health Organization, WHO STAT REG CLUST P; World Health Organization, NOV COR JAP EX CHIN; Wuhan Municipal Health Commision, WUH MUN COMM HLTH HL; Wuhan Municipal Health Commision, WUH MUN HLTH HLTH CO; Xu YB, 2020, SCI CHINA LIFE SCI, V63, P450, DOI 10.1007/s11427-019-1630-2; Zeng LP, 2016, J VIROL, V90, P6573, DOI 10.1128/JVI.03079-15 46 8 8 101 101 MDPI BASEL ST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND 1999-4915 VIRUSES-BASEL Viruses-Basel FEB 2020 12 2 135 10.3390/v12020135 8 Virology Virology KH2ZS WOS:000510516800001 31991541 DOAJ Gold, Green Published 2020-04-01 J Wu, JT; Leung, K; Leung, GM Wu, Joseph T.; Leung, Kathy; Leung, Gabriel M. Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study LANCET English Article EAST RESPIRATORY SYNDROME; HUMAN CORONAVIRUSES 229E; HONG-KONG; TRANSMISSION DYNAMICS; SARS; EPIDEMIC; OC43; IMPACT Background Since Dec 31, 2019, the Chinese city of Wuhan has reported an outbreak of atypical pneumonia caused by the 2019 novel coronavirus (2019-nCoV). Cases have been exported to other Chinese cities, as well as internationally, threatening to trigger a global outbreak. Here, we provide an estimate of the size of the epidemic in Wuhan on the basis of the number of cases exported from Wuhan to cities outside mainland China and forecast the extent of the domestic and global public health risks of epidemics, accounting for social and non-pharmaceutical prevention interventions. Methods We used data from Dec 31, 2019, to Jan 28, 2020, on the number of cases exported from Wuhan internationally (known days of symptom onset from Dec 25, 2019, to Jan 19, 2020) to infer the number of infections in Wuhan from Dec 1, 2019, to Jan 25, 2020. Cases exported domestically were then estimated. We forecasted the national and global spread of 2019-nCoV, accounting for the effect of the metropolitan-wide quarantine of Wuhan and surrounding cities, which began Jan 23-24, 2020. We used data on monthly flight bookings from the Official Aviation Guide and data on human mobility across more than 300 prefecture-level cities in mainland China from the Tencent database. Data on confirmed cases were obtained from the reports published by the Chinese Center for Disease Control and Prevention. Serial interval estimates were based on previous studies of severe acute respiratory syndrome coronavirus (SARS-CoV). A susceptible-exposed-infectious-recovered metapopulation model was used to simulate the epidemics across all major cities in China. The basic reproductive number was estimated using Markov Chain Monte Carlo methods and presented using the resulting posterior mean and 95% credibile interval (CrI). Findings In our baseline scenario, we estimated that the basic reproductive number for 2019-nCoV was 2.68 (95% CrI 2.47-2.86) and that 75 815 individuals (95% CrI 37 304-130 330) have been infected in Wuhan as of Jan 25, 2020. The epidemic doubling time was 6.4 days (95% CrI 5.8-7.1). We estimated that in the baseline scenario, Chongqing, Beijing, Shanghai, Guangzhou, and Shenzhen had imported 461 (95% CrI 227-805), 113 (57-193), 98 (49-168), 111 (56-191), and 80 (40-139) infections from Wuhan, respectively. If the transmissibility of 2019-nCoV were similar everywhere domestically and over time, we inferred that epidemics are already growing exponentially in multiple major cities of China with a lag time behind the Wuhan outbreak of about 1-2 weeks. Interpretation Given that 2019-nCoV is no longer contained within Wuhan, other major Chinese cities are probably sustaining localised outbreaks. Large cities overseas with close transport links to China could also become outbreak epicentres, unless substantial public health interventions at both the population and personal levels are implemented immediately. Independent self-sustaining outbreaks in major cities globally could become inevitable because of substantial exportation of presymptomatic cases and in the absence of large-scale public health interventions. Preparedness plans and mitigation interventions should be readied for quick deployment globally. Copyright (C) 2020 Elsevier Ltd. All rights reserved. [Wu, Joseph T.; Leung, Kathy; Leung, Gabriel M.] Univ Hong Kong, Li Ka Shing Fac Med, Sch Publ Hlth, WHO Collaborating Ctr Infect Dis Epidemiol & Cont, Hong Kong, Peoples R China Wu, JT (reprint author), Univ Hong Kong, Sch Publ Hlth, Li Ka Shing Fac Med, Hong Kong, Peoples R China. joewu@hku.hk ; Wu, Joseph Tsz Kei/C-4450-2009; Leung, Kathy/D-5605-2017 Leung, Gabriel/0000-0002-2503-6283; Wu, Joseph Tsz Kei/0000-0002-3155-5987; Leung, Kathy/0000-0003-4777-388X Health and Medical Research Fund from the Government of the Hong Kong Special Administrative Region We thank Chi-Kin Lam and Miky Wong from School of Public Health, The University of Hong Kong (Hong Kong, China) for technical support. This research was supported by a commissioned grant from the Health and Medical Research Fund from the Government of the Hong Kong Special Administrative Region. 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Symptoms in these cases were nonspecific and no children required respiratory support or intensive care. Chest X-rays lacked definite signs of pneumonia, a defining feature of the infection in adult cases. Notably, eight children persistently tested positive on rectal swabs even after nasopharyngeal testing was negative, raising the possibility of fecal-oral transmission. Children infected with the COVID-19 outbreak coronavirus, SARS-CoV-2, show mild symptoms but prolonged shedding of viral RNA in feces, suggesting that the fecal-oral route might play a role in virus transmission. [Xu, Yi; Li, Xufang; Fang, Chunxiao; Gong, Yu; Shen, Jun; Zhang, Huayan; Gong, Sitang] Guangzhou Med Univ, Dept Pediat, Guangzhou Women & Childrens Med Ctr, Guangzhou, Peoples R China; [Li, Xufang] Guangzhou Med Univ, Dept Ctr Lab, Guangzhou Women & Childrens Med Ctr, Guangzhou, Peoples R China; [Zhu, Bing; Xia, Huimin; Tang, Jinling] Guangzhou Med Univ, Guangzhou Women & Childrens Med Ctr, Clin Data Ctr, Guangzhou, Peoples R China; [Liang, Huiying; Zhang, Huayan; Xia, Huimin; Tang, Jinling; Gong, Sitang] Guangzhou Med Univ, Guangdong Prov Childrens Med Res Ctr, Guangzhou Women & Childrens Med Ctr, Guangzhou, Peoples R China; [Guo, Qiaozhi; Sun, Xin; Zhao, Danyang] Guangzhou Med Univ, Dept Med Adm, Guangzhou Women & Childrens Med Ctr, Guangzhou, Peoples R China; [Zhang, Huayan] Childrens Hosp Philadelphia, Div Neonatol, Philadelphia, PA 19104 USA; [Zhang, Huayan] Childrens Hosp Philadelphia, Dept Pediat, Philadelphia, PA 19104 USA; [Zhang, Huayan] Univ Penn, Philadelphia, PA 19104 USA; [Liu, Hongsheng] Guangzhou Med Univ, Dept Radiol, Guangzhou Women & Childrens Med Ctr, Guangzhou, Peoples R China; [Xia, Huimin; Zhang, Kang] Guangzhou Med Univ, Guangzhou Women & Childrens Med Ctr, Guangdong Prov Key Lab Res Struct Birth Defect Di, Guangzhou, Peoples R China; [Zhang, Kang] Guangzhou Regenerat Med & Hlth Guangdong Lab, Guangzhou, Peoples R China; [Zhang, Kang] Macau Univ Sci & Technol, Fac Med, Ctr Biomed & Innovat, Macau, Peoples R China Gong, ST (reprint author), Guangzhou Med Univ, Dept Pediat, Guangzhou Women & Childrens Med Ctr, Guangzhou, Peoples R China.; Xia, HM; Tang, JL (reprint author), Guangzhou Med Univ, Guangzhou Women & Childrens Med Ctr, Clin Data Ctr, Guangzhou, Peoples R China.; Xia, HM; Tang, JL; Gong, ST (reprint author), Guangzhou Med Univ, Guangdong Prov Childrens Med Res Ctr, Guangzhou Women & Childrens Med Ctr, Guangzhou, Peoples R China.; Xia, HM; Zhang, K (reprint author), Guangzhou Med Univ, Guangzhou Women & Childrens Med Ctr, Guangdong Prov Key Lab Res Struct Birth Defect Di, Guangzhou, Peoples R China.; Zhang, K (reprint author), Guangzhou Regenerat Med & Hlth Guangdong Lab, Guangzhou, Peoples R China.; Zhang, K (reprint author), Macau Univ Sci & Technol, Fac Med, Ctr Biomed & Innovat, Macau, Peoples R China. huiminxia@hotmail.com; jltang@cuhk.edu.hk; kang.zhang@gmail.com; sitangg@126.com National Key Research and Development Program of China [2019YFB1404803]; Guangzhou Regenerative Medicine Guangdong Laboratory [2020GZR110306001]; CDCs of Guangzhou CityUnited States Department of Health & Human ServicesCenters for Disease Control & Prevention - USA This work was funded by the National Key Research and Development Program of China (2019YFB1404803) and Guangzhou Regenerative Medicine Guangdong Laboratory (2020GZR110306001). We thank the CDCs of Guangzhou City and Guangdong Province for helping with confirmation of the diagnosis of the viral infection. [Anonymous], 2020, 36 WHO, P2020; Chen NS, 2020, LANCET, V395, P507, DOI 10.1016/S0140-6736(20)30211-7; Guan Wei-Jie, 2020, N Engl J Med, DOI 10.1056/NEJMoa2002032; Holshue ML, 2020, NEW ENGL J MED, V382, P929, DOI 10.1056/NEJMoa2001191; Huang CL, 2020, LANCET, V395, P497, DOI 10.1016/S0140-6736(20)30183-5; Munster VJ, 2020, NEW ENGL J MED, V382, P692, DOI 10.1056/NEJMp2000929; Wang C, 2020, LANCET, V395, P470, DOI 10.1016/S0140-6736(20)30185-9; Wang Dawei, 2020, JAMA, DOI 10.1001/jama.2020.1585; Zhu N, 2020, NEW ENGL J MED, V382, P727, DOI 10.1056/NEJMoa2001017; Zhu ZQ, 2015, J CLIN VIROL, V69, P30, DOI 10.1016/j.jcv.2015.05.013 10 0 0 97 97 NATURE PUBLISHING GROUP NEW YORK 75 VARICK ST, 9TH FLR, NEW YORK, NY 10013-1917 USA 1078-8956 1546-170X NAT MED Nat. Med. 10.1038/s41591-020-0817-4 MAR 2020 9 Biochemistry & Molecular Biology; Cell Biology; Medicine, Research & Experimental Biochemistry & Molecular Biology; Cell Biology; Research & Experimental Medicine KU0SW WOS:000519422600001 Bronze 2020-04-01 J Nishiura, H; Jung, SM; Linton, NM; Kinoshita, R; Yang, YC; Hayashi, K; Kobayashi, T; Yuan, BY; Akhmetzhanov, AR Nishiura, Hiroshi; Jung, Sung-mok; Linton, Natalie M.; Kinoshita, Ryo; Yang, Yichi; Hayashi, Katsuma; Kobayashi, Tetsuro; Yuan, Baoyin; Akhmetzhanov, Andrei R. The Extent of Transmission of Novel Coronavirus in Wuhan, China, 2020 JOURNAL OF CLINICAL MEDICINE English Editorial Material epidemiology; foreigner; travel; migration; importation; emerging infectious diseases A cluster of pneumonia cases linked to a novel coronavirus (2019-nCoV) was reported by China in late December 2019. Reported case incidence has now reached the hundreds, but this is likely an underestimate. As of 24 January 2020, with reports of thirteen exportation events, we estimate the cumulative incidence in China at 5502 cases (95% confidence interval: 3027, 9057). The most plausible number of infections is in the order of thousands, rather than hundreds, and there is a strong indication that untraced exposures other than the one in the epidemiologically linked seafood market in Wuhan have occurred. [Nishiura, Hiroshi; Jung, Sung-mok; Linton, Natalie M.; Kinoshita, Ryo; Yang, Yichi; Hayashi, Katsuma; Kobayashi, Tetsuro; Yuan, Baoyin; Akhmetzhanov, Andrei R.] Hokkaido Univ, Grad Sch Med, Kita Ku, Kita 15 Jo Nishi 7 Chome, Sapporo, Hokkaido 0608638, Japan; [Nishiura, Hiroshi] Japan Sci & Technol Agcy, CREST, Honcho 4-1-8, Kawaguchi, Saitama 3320012, Japan Nishiura, H (reprint author), Hokkaido Univ, Grad Sch Med, Kita Ku, Kita 15 Jo Nishi 7 Chome, Sapporo, Hokkaido 0608638, Japan.; Nishiura, H (reprint author), Japan Sci & Technol Agcy, CREST, Honcho 4-1-8, Kawaguchi, Saitama 3320012, Japan. nishiurah@med.hokudai.ac.jp; seductmd@med.hokudai.ac.jp; nlinton@gmail.com; kinoshitaryo@gmail.com; lukeyang1993@eis.hokudai.ac.jp; katsuma5miffy@gmail.com; tootsieroll2910@gmail.com; baoyinyuan@gmail.com; akhmetzhanov@gmail.com Akhmetzhanov, Andrei R./B-5530-2013 Akhmetzhanov, Andrei R./0000-0003-3269-7351; Jung, Sung-mok/0000-0002-0787-4515 Japan Agency for Medical Research and Development (AMED)Japan Agency for Medical Research and Development (AMED) [JP18fk0108050]; Japan Society for the Promotion of Science (JSPS) KAKENHIMinistry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI) [17H04701, 17H05808, 18H04895, 19H01074, 18J21587]; Inamori Foundation; Japan Science and Technology Agency (JST) CREST program [JPMJCR1413]; Ministry of Education, Culture, Sports, Science and Technology, JapanMinistry of Education, Culture, Sports, Science and Technology, Japan (MEXT) H.N. received funding from the Japan Agency for Medical Research and Development (AMED) [grant number: JP18fk0108050]; the Japan Society for the Promotion of Science (JSPS) KAKENHI [grant numbers, H.N.: 17H04701, 17H05808, 18H04895 and 19H01074; R.K.: 18J21587], the Inamori Foundation, and the Japan Science and Technology Agency (JST) CREST program [grant number: JPMJCR1413]. S.M.J. and N.M.L. received graduate study scholarship from the Ministry of Education, Culture, Sports, Science and Technology, Japan. 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J. Anesth. 10.1007/s12630-020-01591-x FEB 2020 9 Anesthesiology Anesthesiology KK9FH WOS:000513039800001 32052373 Bronze 2020-04-01 J Riou, J; Althaus, CL Riou, Julien; Althaus, Christian L. Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020 EUROSURVEILLANCE English Article Since December 2019, China has been experiencing a large outbreak of a novel coronavirus (2019-nCoV) which can cause respiratory disease and severe pneumonia. We estimated the basic reproduction number Ro of 2019-nCoV to be around 2.2 (90% high density interval: 1.4-3.8), indicating the potential for sustained human-to-human transmission. Transmission characteristics appear to be of similar magnitude to severe acute respiratory syndrome-related coronavirus (SARS-CoV) and pandemic influenza, indicating a risk of global spread. [Riou, Julien; Althaus, Christian L.] Univ Bern, Inst Social & Prevent Med, Bern, Switzerland Riou, J (reprint author), Univ Bern, Inst Social & Prevent Med, Bern, Switzerland. julien.riou@ispm.unibe.ch Ribeiro, Nuno/AAH-2299-2020 Swiss National Science FoundationSwiss National Science Foundation (SNSF) [174281] JR is funded by the Swiss National Science Foundation (grant 174281). 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Despite intense research efforts, how, when and where new diseases appear are still a source of considerable uncertainty. A severe respiratory disease was recently reported in Wuhan, Hubei province, China. As of 25 January 2020, at least 1,975 cases had been reported since the first patient was hospitalized on 12 December 2019. Epidemiological investigations have suggested that the outbreak was associated with a seafood market in Wuhan. Here we study a single patient who was a worker at the market and who was admitted to the Central Hospital of Wuhan on 26 December 2019 while experiencing a severe respiratory syndrome that included fever, dizziness and a cough. Metagenomic RNA sequencing(4) of a sample of bronchoalveolar lavage fluid from the patient identified a new RNA virus strain from the family Coronaviridae, which is designated here 'WH-Human 1' coronavirus (and has also been referred to as '2019-nCoV'). Phylogenetic analysis of the complete viral genome (29,903 nucleotides) revealed that the virus was most closely related (89.1% nucleotide similarity) to a group of SARS-like coronaviruses (genus Betacoronavirus, subgenus Sarbecovirus) that had previously been found in bats in China(5). This outbreak highlights the ongoing ability of viral spill-over from animals to cause severe disease in humans. [Wu, Fan; Chen, Yan-Mei; Song, Zhi-Gang; Pei, Yuan-Yuan; Zhang, Yu-Ling; Dai, Fa-Hui; Liu, Yi; Wang, Qi-Min; Zheng, Jiao-Jiao; Xu, Lin; Holmes, Edward C.; Zhang, Yong-Zhen] Fudan Univ, Shanghai Publ Hlth Clin Ctr, Shanghai, Peoples R China; [Zhao, Su; Hu, Yi; Tao, Zhao-Wu; Yuan, Ming-Li] Huazhong Univ Sci & Technol, Tongji Med Coll, Cent Hosp Wuhan, Dept Pulm & Crit Care Med, Wuhan, Peoples R China; [Yu, Bin; Tian, Jun-Hua] Wuhan Ctr Dis Control & Prevent, Wuhan, Peoples R China; [Wang, Wen; Zhang, Yong-Zhen] China Ctr Dis Control & Prevent, Natl Inst Communicable Dis Control & Prevent, Dept Zoonosis, Beijing, Peoples R China; [Holmes, Edward C.] Univ Sydney, Sch Life & Environm Sci, Marie Bashir Inst Infect Dis & Biosecur, Sydney, NSW, Australia; [Holmes, Edward C.] Univ Sydney, Sch Med Sci, Sydney, NSW, Australia; [Zhang, Yong-Zhen] Fudan Univ, Sch Publ Hlth, Shanghai, Peoples R China Zhang, YZ (reprint author), Fudan Univ, Shanghai Publ Hlth Clin Ctr, Shanghai, Peoples R China.; Zhang, YZ (reprint author), China Ctr Dis Control & Prevent, Natl Inst Communicable Dis Control & Prevent, Dept Zoonosis, Beijing, Peoples R China.; Zhang, YZ (reprint author), Fudan Univ, Sch Publ Hlth, Shanghai, Peoples R China. zhangyongzhen@shphc.org.cn Special National Project on investigation of basic resources of China [SQ2019FY010009]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China [81861138003, 31930001]; ARC Australian Laureate FellowshipAustralian Research Council [FL170100022] This study was supported by the Special National Project on investigation of basic resources of China (grant SQ2019FY010009) and the National Natural Science Foundation of China (grants 81861138003 and 31930001). E.C.H. is supported by an ARC Australian Laureate Fellowship (FL170100022). Bermingham A, 2012, EUROSURVEILLANCE, V17, P6; Bolger AM, 2014, BIOINFORMATICS, V30, P2114, DOI 10.1093/bioinformatics/btu170; Cao Y, 2014, BIOINFORMATICS, V30, P1674, DOI 10.1093/bioinformatics/btu104; Drosten C, 2003, NEW ENGL J MED, V348, P1967, DOI 10.1056/NEJMoa030747; Edgar RC, 2004, NUCLEIC ACIDS RES, V32, P1792, DOI 10.1093/nar/gkh340; Ge XY, 2013, NATURE, V503, P535, DOI 10.1038/nature12711; Gorbalenya A. 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Despite intense research efforts, how, when and where new diseases appear are still a source of considerable uncertainty. A severe respiratory disease was recently reported in Wuhan, Hubei province, China. As of 25 January 2020, at least 1,975 cases had been reported since the first patient was hospitalized on 12 December 2019. Epidemiological investigations have suggested that the outbreak was associated with a seafood market in Wuhan. Here we study a single patient who was a worker at the market and who was admitted to the Central Hospital of Wuhan on 26 December 2019 while experiencing a severe respiratory syndrome that included fever, dizziness and a cough. Metagenomic RNA sequencing(4) of a sample of bronchoalveolar lavage fluid from the patient identified a new RNA virus strain from the family Coronaviridae, which is designated here 'WH-Human 1' coronavirus (and has also been referred to as '2019-nCoV'). Phylogenetic analysis of the complete viral genome (29,903 nucleotides) revealed that the virus was most closely related (89.1% nucleotide similarity) to a group of SARS-like coronaviruses (genus Betacoronavirus, subgenus Sarbecovirus) that had previously been found in bats in China(5). This outbreak highlights the ongoing ability of viral spill-over from animals to cause severe disease in humans. Phylogenetic and metagenomic analyses of the complete viral genome of a new coronavirus from the family Coronaviridae reveal that the virus is closely related to a group of SARS-like coronaviruses found in bats in China. [Wu, Fan; Chen, Yan-Mei; Song, Zhi-Gang; Pei, Yuan-Yuan; Zhang, Yu-Ling; Dai, Fa-Hui; Liu, Yi; Wang, Qi-Min; Zheng, Jiao-Jiao; Xu, Lin; Holmes, Edward C.; Zhang, Yong-Zhen] Fudan Univ, Shanghai Publ Hlth Clin Ctr, Shanghai, Peoples R China; [Zhao, Su; Hu, Yi; Tao, Zhao-Wu; Yuan, Ming-Li] Huazhong Univ Sci & Technol, Dept Pulm & Crit Care Med, Tongji Med Coll, Cent Hosp Wuhan, Wuhan, Peoples R China; [Yu, Bin; Tian, Jun-Hua] Wuhan Ctr Dis Control & Prevent, Wuhan, Peoples R China; [Wang, Wen; Zhang, Yong-Zhen] China Ctr Dis Control & Prevent, Natl Inst Communicable Dis Control & Prevent, Dept Zoonosis, Beijing, Peoples R China; [Holmes, Edward C.] Univ Sydney, Marie Bashir Inst Infect Dis & Biosecur, Sch Life & Environm Sci, Sydney, NSW, Australia; [Holmes, Edward C.] Univ Sydney, Sch Med Sci, Sydney, NSW, Australia; [Zhang, Yong-Zhen] Fudan Univ, Sch Publ Hlth, Shanghai, Peoples R China Zhang, YZ (reprint author), Fudan Univ, Shanghai Publ Hlth Clin Ctr, Shanghai, Peoples R China.; Zhang, YZ (reprint author), China Ctr Dis Control & Prevent, Natl Inst Communicable Dis Control & Prevent, Dept Zoonosis, Beijing, Peoples R China.; Zhang, YZ (reprint author), Fudan Univ, Sch Publ Hlth, Shanghai, Peoples R China. zhangyongzhen@shphc.org.cn Special National Project on investigation of basic resources of China [SQ2019FY010009]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China [81861138003, 31930001]; ARC Australian Laureate FellowshipAustralian Research Council [FL170100022] This study was supported by the Special National Project on investigation of basic resources of China (grant SQ2019FY010009) and the National Natural Science Foundation of China (grants 81861138003 and 31930001). E.C.H. is supported by an ARC Australian Laureate Fellowship (FL170100022). Bermingham A, 2012, EUROSURVEILLANCE, V17, P6; Bolger AM, 2014, BIOINFORMATICS, V30, P2114, DOI 10.1093/bioinformatics/btu170; Cao Y, 2014, BIOINFORMATICS, V30, P1674, DOI 10.1093/bioinformatics/btu104; Drosten C, 2003, NEW ENGL J MED, V348, P1967, DOI 10.1056/NEJMoa030747; Edgar RC, 2004, NUCLEIC ACIDS RES, V32, P1792, DOI 10.1093/nar/gkh340; Ge XY, 2013, NATURE, V503, P535, DOI 10.1038/nature12711; Gorbalenya A. E, 2020, SEVERE ACUTE RESP SY, DOI [10.1101/2020.02.07.93786, DOI 10.1101/2020.02.07.93786]; Grabherr MG, 2011, NAT BIOTECHNOL, V29, P644, DOI 10.1038/nbt.1883; Guindon S, 2010, SYST BIOL, V59, P307, DOI 10.1093/sysbio/syq010; HAMRE D, 1966, P SOC EXP BIOL MED, V121, P190, DOI 10.3181/00379727-121-30734; Hu B, 2017, PLOS PATHOG, V13, DOI 10.1371/journal.ppat.1006698; Hu D, 2018, EMERG MICROBES INFEC, V7, DOI 10.1038/s41426-018-0155-5; Hulswit RJG, 2019, P NATL ACAD SCI USA, V116, P2681, DOI 10.1073/pnas.1809667116; Hwang WC, 2006, J BIOL CHEM, V281, P34610, DOI 10.1074/jbc.M603275200; Katoh K, 2013, MOL BIOL EVOL, V30, P772, DOI 10.1093/molbev/mst010; Langmead B, 2012, NAT METHODS, V9, P357, DOI [10.1038/nmeth.1923, 10.1038/NMETH.1923]; Lau SKP, 2005, P NATL ACAD SCI USA, V102, P14040, DOI 10.1073/pnas.0506735102; Li B, 2010, BIOINFORMATICS, V26, P493, DOI 10.1093/bioinformatics/btp692; Li F, 2005, SCIENCE, V309, P1864, DOI 10.1126/science.1116480; Li H, 2009, BIOINFORMATICS, V25, P1754, DOI 10.1093/bioinformatics/btp324; Li WD, 2005, SCIENCE, V310, P676, DOI 10.1126/science.1118391; Lin XD, 2017, VIROLOGY, V507, P1, DOI 10.1016/j.virol.2017.03.019; Lole KS, 1999, J VIROL, V73, P152, DOI 10.1128/JVI.73.1.152-160.1999; Martin DP, 2010, BIOINFORMATICS, V26, P2462, DOI 10.1093/bioinformatics/btq467; MCINTOSH K, 1967, P NATL ACAD SCI USA, V58, P2268, DOI 10.1073/pnas.58.6.2268; McMullan LK, 2019, LANCET INFECT DIS, V19, P1023, DOI 10.1016/S1473-3099(19)30291-9; Menachery VD, 2015, NAT MED, V21, P1508, DOI 10.1038/nm.3985; Ren W, 2008, J VIROL, V82, P1899, DOI 10.1128/JVI.01085-07; Shi M, 2018, NATURE, V556, P197, DOI 10.1038/s41586-018-0012-7; Shi M, 2016, NATURE, V540, P539, DOI 10.1038/nature20167; Tamura K, 2011, MOL BIOL EVOL, V28, P2731, DOI 10.1093/molbev/msr121; van der Hoek L, 2004, NAT MED, V10, P368, DOI 10.1038/nm1024; Ventura CV, 2016, LANCET, V387, P228, DOI 10.1016/S0140-6736(16)00006-4; Wang W, 2017, J VIROL, V91, DOI [10.1128/JVI.00764-17, 10.1128/jvi.00764-17]; Wang W, 2015, VIROLOGY, V474, P19, DOI 10.1016/j.virol.2014.10.017; Waterhouse A, 2018, NUCLEIC ACIDS RES, V46, pW296, DOI 10.1093/nar/gky427; WHO, 2020, WHO DIR GEN REM MED; Wolfe ND, 2007, NATURE, V447, P279, DOI 10.1038/nature05775; Woo PCY, 2005, J VIROL, V79, P884, DOI 10.1128/JVI.79.2.884-895.2005; Xu L, 2016, VIROL SIN, V31, P69, DOI 10.1007/s12250-016-3727-3; Yadav PD, 2019, EMERG INFECT DIS, V25, P1003, DOI 10.3201/eid2505.181076; Yang XL, 2016, J VIROL, V90, P3253, DOI 10.1128/JVI.02582-15; Zhou P, 2020, NATURE, DOI 10.1038/s41586-020-2012-7 43 14 14 83 83 NATURE PUBLISHING GROUP LONDON MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND 0028-0836 1476-4687 NATURE Nature 10.1038/s41586-020-2008-3 FEB 2020 20 Multidisciplinary Sciences Science & Technology - Other Topics KS1VQ WOS:000518098100002 32015508 Other Gold 2020-04-01 J Holshue, ML; DeBolt, C; Lindquist, S; Lofy, KH; Wiesman, J; Bruce, H; Spitters, C; Ericson, K; Wilkerson, S; Tural, A; Diaz, G; Cohn, A; Fox, L; Patel, A; Gerber, SI; Kim, L; Tong, SX; Lu, XY; Lindstrom, S; Pallansch, MA; Weldon, WC; Biggs, HM; Uyeki, TM; Pillai, SK Holshue, Michelle L.; DeBolt, Chas; Lindquist, Scott; Lofy, Kathy H.; Wiesman, John; Bruce, Hollianne; Spitters, Christopher; Ericson, Keith; Wilkerson, Sara; Tural, Ahmet; Diaz, George; Cohn, Amanda; Fox, LeAnne; Patel, Anita; Gerber, Susan I.; Kim, Lindsay; Tong, Suxiang; Lu, Xiaoyan; Lindstrom, Steve; Pallansch, Mark A.; Weldon, William C.; Biggs, Holly M.; Uyeki, Timothy M.; Pillai, Satish K. Washington State-nCoV Case Invest First Case of 2019 Novel Coronavirus in the United States NEW ENGLAND JOURNAL OF MEDICINE English Article A healthy 35 year-old man who had visited Wuhan, China, presented with cough and fever that progressed to pneumonia. This report describes the diagnosis, clinical course, and management of the condition. The case highlights the importance of close coordination between clinicians and public health authorities at the local, state, and federal levels. An outbreak of novel coronavirus (2019-nCoV) that began in Wuhan, China, has spread rapidly, with cases now confirmed in multiple countries. We report the first case of 2019-nCoV infection confirmed in the United States and describe the identification, diagnosis, clinical course, and management of the case, including the patient's initial mild symptoms at presentation with progression to pneumonia on day 9 of illness. This case highlights the importance of close coordination between clinicians and public health authorities at the local, state, and federal levels, as well as the need for rapid dissemination of clinical information related to the care of patients with this emerging infection. [Holshue, Michelle L.] Ctr Dis Control & Prevent, Epidem Intelligence Serv, Atlanta, GA USA; [Cohn, Amanda; Fox, LeAnne; Patel, Anita] Ctr Dis Control & Prevent, Natl Ctr Immunizat & Resp Dis, Atlanta, GA USA; [Gerber, Susan I.; Kim, Lindsay; Tong, Suxiang; Lu, Xiaoyan; Lindstrom, Steve; Pallansch, Mark A.; Weldon, William C.; Biggs, Holly M.] Ctr Dis Control & Prevent, Div Viral Dis, Atlanta, GA USA; [Uyeki, Timothy M.] Ctr Dis Control & Prevent, Influenza Div, Atlanta, GA USA; [Pillai, Satish K.] Ctr Dis Control & Prevent, Div Preparedness & Emerging Infect, Atlanta, GA USA; [Holshue, Michelle L.; DeBolt, Chas; Lindquist, Scott; Lofy, Kathy H.; Wiesman, John] Washington State Dept Hlth, Shoreline, WA USA; [Bruce, Hollianne; Spitters, Christopher] Snohomish Hlth Dist, Everett, WA USA; [Ericson, Keith] Providence Med Grp, Everett, WA USA; [Wilkerson, Sara; Tural, Ahmet; Diaz, George] Providence Reg Med Ctr, Everett, WA USA; [Spitters, Christopher] Univ Washington, Sch Med, Dept Med, Seattle, WA 98195 USA Holshue, ML (reprint author), Washington State Dept Hlth Publ Hlth Labs, 1610 NE 150th St, Shoreline, WA 98155 USA. michelle.holshue@doh.wa.gov Centers for Disease Control and Prevention, 2020, INT GUID HEALTHC PRO; Centers for Disease Control and Prevention, 2020, INFECT CONTROL; Centers for Disease Control and Prevention, 2020, 2019 NOV COR; Centers for Disease Control and Prevention, 2020, 2019 NOV COR 2019 NC; Centers for Disease Control and Prevention, 2020, REAL TIM RT PCR PAN; Centers for Disease Control and Prevention, 2020, INT GUID COLL HANDL; Chan JF-W, 2020, LANCET; Chen N, 2020, LANCET; Huang C, 2020, LANCET; Johns Hopkins University CSSE, WUH COR 2019 NCOV GL; Mulangu S, 2019, NEW ENGL J MED, V381, P2293, DOI 10.1056/NEJMoa1910993; Phan LT, 2020, NEW ENGL J MED, V382, P872, DOI 10.1056/NEJMc2001272; Sheahan Timothy P, 2020, Nat Commun, V11, P222, DOI 10.1038/s41467-019-13940-6; Washington State Department of Health, NOV COR OUTBR 2020; World Health Organization, 2020, PNEUM UNK CAUS CHIN; World Health Organization, 2020, NOV COR CHIN; Zhu N, 2020, NEW ENGL J MED, V382, P727, DOI 10.1056/NEJMoa2001017 17 17 17 82 82 MASSACHUSETTS MEDICAL SOC WALTHAM WALTHAM WOODS CENTER, 860 WINTER ST,, WALTHAM, MA 02451-1413 USA 0028-4793 1533-4406 NEW ENGL J MED N. 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J. Clin. Invest. MAR 2020 50 3 10.1111/eci.13209 JAN 2020 4 Medicine, General & Internal; Medicine, Research & Experimental General & Internal Medicine; Research & Experimental Medicine KS9EZ WOS:000510768300001 32003000 Bronze 2020-04-01 J Zhang, L; Liu, YH Zhang, Lei; Liu, Yunhui Potential interventions for novel coronavirus in China: A systematic review JOURNAL OF MEDICAL VIROLOGY English Review 2019-CoV; coronavirus; COVID-19; MERS; potential interventions; SARS ACUTE RESPIRATORY SYNDROME; INFECTIOUS-BRONCHITIS VIRUS; ALPHA-LIPOIC ACID; ANGIOTENSIN-CONVERTING ENZYME-2; HUMAN MONOCLONAL-ANTIBODY; SARS CORONAVIRUS; VITAMIN-A; CONVALESCENT PLASMA; NITRIC-OXIDE; COXSACKIEVIRUS B3 An outbreak of a novel coronavirus (COVID-19 or 2019-CoV) infection has posed significant threats to international health and the economy. In the absence of treatment for this virus, there is an urgent need to find alternative methods to control the spread of disease. Here, we have conducted an online search for all treatment options related to coronavirus infections as well as some RNA-virus infection and we have found that general treatments, coronavirus-specific treatments, and antiviral treatments should be useful in fighting COVID-19. We suggest that the nutritional status of each infected patient should be evaluated before the administration of general treatments and the current children's RNA-virus vaccines including influenza vaccine should be immunized for uninfected people and health care workers. In addition, convalescent plasma should be given to COVID-19 patients if it is available. In conclusion, we suggest that all the potential interventions be implemented to control the emerging COVID-19 if the infection is uncontrollable. 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Being able to accurately forecast the fate of an epidemic is an extremely important but difficult task. Due to limited knowledge of the novel disease, the high uncertainty involved and the complex societal-political factors that influence the widespread of the new virus, any forecast is anything but reliable. Another factor is the insufficient amount of available data. Data samples are often scarce when an epidemic just started. With only few training samples on hand, finding a forecasting model which offers forecast at the best efforts is a big challenge in machine learning. In the past, three popular methods have been proposed, they include 1) augmenting the existing little data, 2) using a panel selection to pick the best forecasting model from several models, and 3) fine-tuning the parameters of an individual forecasting model for the highest possible accuracy. In this paper, a methodology that embraces these three virtues of data mining from a small dataset is proposed. An experiment that is based on the recent coronavirus outbreak originated from Wuhan is conducted by applying this methodology. It is shown that an optimized forecasting model that is constructed from a new algorithm, namely polynomial neural network with corrective feedback (PNN+cf) is able to make a forecast that has relatively the lowest prediction error. The results showcase that the newly proposed methodology and PNN+cf are useful in generating acceptable forecast upon the critical time of disease outbreak when the samples are far from abundant. 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M.; Wu, Joseph T.; Cowling, Benjamin J.; Leung, Gabriel M.] Univ Hong Kong, Sch Publ Hlth, Li Ka Shing Fac Med, WHO,Collaborating Ctr Infect Dis Epidemiol & Cont, Hong Kong, Peoples R China Cowling, BJ (reprint author), Univ Hong Kong, Sch Publ Hlth, Li Ka Shing Fac Med, WHO,Collaborating Ctr Infect Dis Epidemiol & Cont, Hong Kong, Peoples R China. bcowling@hku.hk Ribeiro, Nuno/AAH-2299-2020; Lau, Eric/C-4487-2009; Wu, Joseph Tsz Kei/C-4450-2009; Leung, Kathy/D-5605-2017 Lau, Eric/0000-0002-6688-9637; Wu, Joseph Tsz Kei/0000-0002-3155-5987; Leung, Kathy/0000-0003-4777-388X Health and Medical Research Fund, Food and Health Bureau, Government of the Hong Kong Special Administrative Region This project was supported by a commissioned grant from the Health and Medical Research Fund, Food and Health Bureau, Government of the Hong Kong Special Administrative Region. 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Rev. Cardiol. 10.1038/s41569-020-0360-5 MAR 2020 2 Cardiac & Cardiovascular Systems Cardiovascular System & Cardiology KS3VK WOS:000518240500001 32139904 Bronze 2020-04-01 J Al-Tawfiq, JA; Auwaerter, PG Al-Tawfiq, J. A.; Auwaerter, P. G. Healthcare-associated infections: the hallmark of Middle East respiratory syndrome coronavirus with review of the literature JOURNAL OF HOSPITAL INFECTION English Review Middle East respiratory syndrome coronavirus; MERS; Healthcare-associated outbreaks MERS-COV OUTBREAK; SAUDI-ARABIA; SOUTH-KOREA; FAMILY CLUSTER; HOSPITAL OUTBREAK; HIGH FATALITY; TRANSMISSION; EPIDEMIOLOGY; PREVENTION; PATIENT Middle East respiratory syndrome coronavirus (MERS-CoV) is capable of causing acute respiratory illness. Laboratory-confirmed MERS-CoV cases may be asymptomatic, have mild disease, or have a life-threatening infection with a high case fatality rate. 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Eng. News FEB 24 2020 98 8 5 5 1 Chemistry, Multidisciplinary; Engineering, Chemical Chemistry; Engineering KQ0XL WOS:000516654700005 2020-04-01 J Catton, H Catton, H. Global challenges in health and health care for nurses and midwives everywhere INTERNATIONAL NURSING REVIEW English Article climate change; coronavirus; COVID-19 recruitment and retention; Year of the Nurse and Midwife The next decade is likely to produce any number of global challenges that will affect health and health care, including pan-national infections such as the new coronavirus COVID-19 and others that will be related to global warming. Nurses will be required to react to these events, even though they will also be affected as ordinary citizens. The future resilience of healthcare services will depend on having sufficient numbers of nurses who are adequately resourced to face the coming challenges. [Catton, H.] Int Council Nurses, Geneva, Switzerland Catton, H (reprint author), Int Council Nurses, Geneva, Switzerland. catton@icn.ch Ribeiro, Nuno/AAH-2299-2020 International Council of Nurses, 2018, NURS CLIM CHANG HLTH; International Council of Nurses, 2019, COR COMP DIS NURS VE; International Council of Nurses, 2020, POP ACKN INT YEAR NU; Organisation WH, 2020, 2 M INT HLTH REG 200; Watts N, 2019, LANCET, V394, P1836, DOI 10.1016/S0140-6736(19)32596-6; World Health Organization, 2020, YEAR NURS MIDW 2020 6 0 0 72 72 WILEY HOBOKEN 111 RIVER ST, HOBOKEN 07030-5774, NJ USA 0020-8132 1466-7657 INT NURS REV Int. Nurs. Rev. MAR 2020 67 1 4 6 10.1111/inr.12578 3 Nursing Nursing KN3QG WOS:000514754800002 32083728 Bronze 2020-04-01 J Jin, YB; Long, JT; Ma, X; Zhou, TH; Zhang, ZZ; Lin, HX; Long, JL; Wang, XX Jin, Yubo; Long, Jintao; Ma, Xi; Zhou, Tanghua; Zhang, Zizhong; Lin, Huaxiang; Long, Jinlin; Wang, Xuxu Synthesis of caged iodine-modified ZnO nanomaterials and study on their visible light photocatalytic antibacterial properties APPLIED CATALYSIS B-ENVIRONMENTAL English Article Iodine-modified ZnO; Surface oxygen vacancy defects; Photocatalysis; Disinfection RESPIRATORY SYNDROME CORONAVIRUS; HIGHLY EFFICIENT; OXYGEN VACANCY; NANOPARTICLES; NANOSHEETS; DESTRUCTION; COMPOSITES; CELLS; FILM The grain size and surface oxygen vacancy concentration of ZnO have great influence on its photocatalytic performance. In this work, caged Iodine-modified ZnO (I-ZnO-n) catalyst with nano-structure and surface oxygen vacancy were successfully prepared by reflux method. The crystal structure, surface properties and optical properties were characterized by XRD, SEM, TEM, RAMAN, ESR and EPR. And the photocatalytic antibacterial activity under visible light has been tested. The results show that the nano-structure I-ZnO-n's band gap is narrow than ZnO because of the existence of oxygen vacancy. And I-ZnO-n exhibits better antibacterial property than micron-structured Iodine-modified ZnO. The ESR and electrochemical experiments confirm that the I-ZnO-n has much more surface oxygen vacancy and higher separation efficiency of photogenic carriers than micron-structured Iodine-modified ZnO, which results its superior photocatalytic performance. [Jin, Yubo; Long, Jintao; Ma, Xi; Zhou, Tanghua; Zhang, Zizhong; Lin, Huaxiang; Long, Jinlin; Wang, Xuxu] Fuzhou Univ, Coll Chem, State Key Lab Photocatalysis Energy & Environm, Fuzhou 350116, Fujian, Peoples R China Lin, HX (reprint author), Fuzhou Univ, Coll Chem, State Key Lab Photocatalysis Energy & Environm, Fuzhou 350116, Fujian, Peoples R China. lhx@fzu.edu.cn wang, Xuxu/0000-0003-3228-109X; Zhang, Zizhong/0000-0002-9541-8981 NSFCNational Natural Science Foundation of China [21773031, 21673042, 21673043]; Science and Technology project of Fujian Province of P.R. China [2018H6008] This work was financially supported by the NSFC (Grant No. 21773031, 21673042 and 21673043), the Science and Technology project of Fujian Province of P.R. China (2018H6008). 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The COVID-19 epidemic TROPICAL MEDICINE & INTERNATIONAL HEALTH English Editorial Material COVID-19; Epidemic; SARS-CoV2; Wuhan; 2019-nCoV SARS [Velavan, Thirumalaisamy P.; Meyer, Christian G.] Univ Klinikum Tubingen, Inst Trop Med, Tubingen, Germany; [Velavan, Thirumalaisamy P.; Meyer, Christian G.] Vietnamese German Ctr Med Res, Hanoi, Vietnam; [Velavan, Thirumalaisamy P.; Meyer, Christian G.] Duy Tan Univ, Fac Med, Da Nang, Viet Nam Velavan, TP (reprint author), Inst Trop Med, Wilhelmstr 27, D-72074 Tubingen, Germany. velavan@medizin.uni-tuebingen.de Velavan, Thirumalaisamy P/0000-0002-9809-9883 Bauch CT, 2005, EPIDEMIOLOGY, V16, P791, DOI 10.1097/01.ede.0000181633.80269.4c; Chan JFW, 2020, LANCET, V395, P514, DOI 10.1016/S0140-6736(20)30154-9; Chu CM, 2004, THORAX, V59, P252, DOI 10.1136/thorax.2003.012658; GISAID Global Initiative on Sharing All Influenza Data, PHYL SARS BET INCL N; Guan W, 2020, CLIN CHARACTERISTICS, DOI [10.1101/2020.02.06.20020974, DOI 10.1101/2020.02.06.20020974]; Holshue ML, 2019, N ENGL J MED; Kono M, 2008, ANTIVIR RES, V77, P150, DOI 10.1016/j.antiviral.2007.10.011; Li Qun, 2020, N Engl J Med, V382, P1199, DOI 10.1056/NEJMoa2001316; Richardson P, 2020, LANCET, V395, pE30, DOI 10.1016/S0140-6736(20)30304-4; Rottier PJM., 2013, CORONAVIRIDAE, P115; TYRRELL DA, 1966, LANCET, V1, P76; Wang ML, 2020, CELL RES, V30, P269, DOI 10.1038/s41422-020-0282-0; World Health Organization, 2019, MIDDL E RESP SYNDR C; World Health Organization, 2020, CUM NUMB REP PROBL C, DOI DOI 10.1016/J.IJID.2020.01.050; Zhao Shi, 2020, Int J Infect Dis, V92, P214, DOI 10.1016/j.ijid.2020.01.050; Zhou P, 2020, NATURE, DOI 10.1038/s41586-020-2012-7 16 0 0 71 71 WILEY HOBOKEN 111 RIVER ST, HOBOKEN 07030-5774, NJ USA 1360-2276 1365-3156 TROP MED INT HEALTH Trop. Med. Int. Health MAR 2020 25 3 278 280 10.1111/tmi.13383 3 Public, Environmental & Occupational Health; Tropical Medicine Public, Environmental & Occupational Health; Tropical Medicine KR1QV WOS:000517394200001 32052514 Bronze 2020-04-01 J MacKenzie, D MacKenzie, Debora Covid-19 goes global NEW SCIENTIST English News Item 0 0 0 71 71 REED BUSINESS INFORMATION LTD SUTTON QUADRANT HOUSE THE QUADRANT, SUTTON SM2 5AS, SURREY, ENGLAND 0262-4079 NEW SCI New Sci. FEB 29 2020 245 3271 7 7 1 Multidisciplinary Sciences Science & Technology - Other Topics KR5NS WOS:000517665700001 2020-04-01 J Lim, J; Jeon, S; Shin, HY; Kim, MJ; Seong, YM; Lee, WJ; Choe, KW; Kang, YM; Lee, B; Park, SJ Lim, Jaegyun; Jeon, Seunghyun; Shin, Hyun-Young; Kim, Moon Jung; Seong, Yu Min; Lee, Wang Jun; Choe, Kang-Won; Kang, Yu Min; Lee, Baeckseung; Park, Sang-Joon Case of the Index Patient Who Caused Tertiary Transmission of Coronavirus Disease 2019 in Korea: the Application of Lopinavir/Ritonavir for the Treatment of COVID-19 Pneumonia Monitored by Quantitative RT-PCR JOURNAL OF KOREAN MEDICAL SCIENCE English Article Coronavirus; COVID-19; Pneumonia; Tertiary Infection; Viral Load; Real Time Reverse-Transcriptase Polymerase Chain Reaction Since mid-December of 2019, coronavirus disease 2019 (COVID-19) has been spreading from Wuhan, China. The confirmed COVID-19 patients in South Korea are those who came from or visited China. As secondary transmissions have occurred and the speed of transmission is accelerating, there are rising concerns about community infections. The 54-year old male is the third patient diagnosed with COVID-19 in Korea. He is a worker for a clothing business and had mild respiratory symptoms and intermittent fever in the beginning of hospitalization, and pneumonia symptoms on chest computerized tomography scan on day 6 of admission. This patient caused one case of secondary transmission and three cases of tertiary transmission. Hereby, we report the clinical findings of the index patient who was the first to cause tertiary transmission outside China. Interestingly, after lopinavir/ritonavir (Kaletra, AbbVie) was administered, beta-coronavirus viral loads significantly decreased and no or little coronavirus titers were observed. [Lim, Jaegyun; Kim, Moon Jung] Hanyang Univ, Myongji Hosp, Coll Med, Dept Lab Med, Goyang, South Korea; [Jeon, Seunghyun] Myongji Hosp, New Horizon Canc Inst, Goyang, South Korea; [Shin, Hyun-Young] Hanyang Univ, Myongji Hosp, Coll Med, Dept Family Med, Goyang, South Korea; [Seong, Yu Min] Myongji Hosp, Dept Internal Med, Goyang, South Korea; [Lee, Wang Jun] Myongji Hosp, Dept Gen Surg, Goyang, South Korea; [Choe, Kang-Won; Kang, Yu Min] Myongji Hosp, Dept Infect Dis, Goyang, South Korea; [Lee, Baeckseung] CancerROP, 173 Digital Ro, Seoul 08511, South Korea; [Park, Sang-Joon] Myongji Hosp, Dept Pulm & Crit Care Med, 55 Havasu Ro,14 Beon Gil, Goyang 10475, South Korea Lee, B (reprint author), CancerROP, 173 Digital Ro, Seoul 08511, South Korea.; Park, SJ (reprint author), Myongji Hosp, Dept Pulm & Crit Care Med, 55 Havasu Ro,14 Beon Gil, Goyang 10475, South Korea. baeckseung@gmail.com; drjoseph@mjh.or.kr Ribeiro, Nuno/AAH-2299-2020 Kim, Moon Jung/0000-0003-4148-9116; Kang, Yu Min/0000-0002-4368-9878; Lim, Jaegyun/0000-0002-3553-0058; Shin, Hyun-Young/0000-0001-7261-3365 Chang D, 2020, JAMA; Hamer M, 2019, BRAIN BEHAV IMMUN, V76, P280, DOI 10.1016/j.bbi.2018.12.011; Kim JY, 2020, J KOREAN MED SCI, V35, DOI 10.3346/jkms.2020.35.e61; Li Q, 2020, N ENGL J MED; Rothe C, 2020, N ENGL J MED 5 3 3 71 71 KOREAN ACAD MEDICAL SCIENCES SEOUL 302 75 DONG DU ICHON, DONG YONGSAN KU, SEOUL 140 031, SOUTH KOREA 1011-8934 1598-6357 J KOREAN MED SCI J. 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A novel coronavirus outbreak of global health concern LANCET English Editorial Material ACUTE RESPIRATORY SYNDROME; EPIDEMIOLOGY [Wang, Chen] China Japan Friendship Hosp, Ctr Resp Med, Dept Pulm & Crit Care Med, Beijing 100029, Peoples R China; [Wang, Chen] Natl Clin Res Ctr Resp Dis, Beijing, Peoples R China; [Wang, Chen] Chinese Acad Med Sci & Peking Union Med Coll, Beijing, Peoples R China; [Wang, Chen] Chinese Acad Med Sci, Inst Resp Med, Beijing, Peoples R China; [Wang, Chen] Capital Med Univ, Dept Resp Med, Beijing, Peoples R China; [Horby, Peter W.] Univ Oxford, Ctr Trop Med & Global Hlth, Oxford, England; [Hayden, Frederick G.] Univ Virginia, Sch Med, Dept Med, Charlottesville, VA 22908 USA; [Gao, George F.] Chinese Ctr Dis Control & Prevent China CDC, Natl Inst Viral Dis Control & Prevent, Beijing, Peoples R China Wang, C (reprint author), China Japan Friendship Hosp, Ctr Resp Med, Dept Pulm & Crit Care Med, Beijing 100029, Peoples R China.; Wang, C (reprint author), Natl Clin Res Ctr Resp Dis, Beijing, Peoples R China.; Wang, C (reprint author), Chinese Acad Med Sci & Peking Union Med Coll, Beijing, Peoples R China.; Wang, C (reprint author), Chinese Acad Med Sci, Inst Resp Med, Beijing, Peoples R China.; Wang, C (reprint author), Capital Med Univ, Dept Resp Med, Beijing, Peoples R China. cyh-birm@263.net Ribeiro, Nuno/AAH-2299-2020 [Anonymous], 2020, ANN HEADQ NOV COR PN; Assiri A, 2013, LANCET INFECT DIS, V13, P752, DOI 10.1016/S1473-3099(13)70204-4; Chan JFW, 2020, LANCET, V395, P514, DOI 10.1016/S0140-6736(20)30154-9; China National Health Commission, 2020, UPD NOV COR PNEUM OU; Huang CL, 2020, LANCET, V395, P497, DOI 10.1016/S0140-6736(20)30183-5; Leung GM, 2004, ANN INTERN MED, V141, P662, DOI 10.7326/0003-4819-141-9-200411020-00006; US Centers for Disease Control and Prevention, 2020, 1 TRAV REL CAS 2019; Viboud C, 2013, J INFECT DIS, V207, P721, DOI 10.1093/infdis/jis745; *WHO, 2003, SUMM PROB SARS CAS O; WHO, 2020, 2 WHO; World Health Organization, 2020, NOV COR THAIL EXCH; World Health Organization, 2020, NOV COR JAP EXCH; World Health Organization, 2020, NOV COR REP KOR EXCH; World Health Organization, 2020, CLIN MAN SEV AC RESP; World Health Organization (WHO), 2020, MIDDL E RESP SYNDR C; Zhong NS, 2003, LANCET, V362, P1353, DOI 10.1016/S0140-6736(03)14630-2 16 25 26 69 69 ELSEVIER SCIENCE INC NEW YORK STE 800, 230 PARK AVE, NEW YORK, NY 10169 USA 0140-6736 1474-547X LANCET Lancet FEB 15 2020 395 10223 470 473 10.1016/S0140-6736(20)30185-9 5 Medicine, General & Internal General & Internal Medicine KN1CG WOS:000514576900009 31986257 Bronze 2020-04-01 J Brown, AJ; Won, JJ; Graham, RL; Dinnon, KH; Sims, AC; Feng, JY; Cihlar, T; Denison, MR; Baric, RS; Sheahan, TP Brown, Ariane J.; Won, John J.; Graham, Rachel L.; Dinnon, Kenneth H., III; Sims, Amy C.; Feng, Joy Y.; Cihlar, Tomas; Denison, Mark R.; Baric, Ralph S.; Sheahan, Timothy P. Broad spectrum antiviral remdesivir inhibits human endemic and zoonotic deltacoronaviruses with a highly divergent RNA dependent RNA polymerase ANTIVIRAL RESEARCH English Article Coronavirus; Emerging viruses; Broad-spectrum antivirals; GS-5743; Remdesivir HUMAN CORONAVIRUS OC43; PORCINE DELTACORONAVIRUS; SARS; REPLICATION; DISCOVERY; INFECTION; EFFICACY; GS-5734; VIRUS; MODEL The genetically diverse Orthocoronavirinae (CoV) family is prone to cross species transmission and disease emergence in both humans and livestock. Viruses similar to known epidemic strains circulating in wild and domestic animals further increase the probability of emergence in the future. Currently, there are no approved therapeutics for any human CoV presenting a clear unmet medical need. Remdesivir (RDV, GS-5734) is a monophosphoramidate prodrug of an adenosine analog with potent activity against an array of RNA virus families including Filoviridae, Paramyxoviridae, Pneumoviridae, and Orthocoronavirinae, through the targeting of the viral RNA dependent RNA polymerase (RdRp). We developed multiple assays to further define the breadth of RDV antiviral activity against the CoV family. Here, we show potent antiviral activity of RDV against endemic human CoVs OC43 (HCoV-OC43) and 229E (HCoV-229E) with submicromolar EC50 values. Of known CoVs, the members of the deltacoronavirus genus have the most divergent RdRp as compared to SARS- and MERS-CoV and both avian and porcine members harbor a native residue in the RdRp that confers resistance in beta-CoVs. Nevertheless, RDV is highly efficacious against porcine deltacoronavirus (PDCoV). These data further extend the known breadth and antiviral activity of RDV to include both contemporary human and highly divergent zoonotic CoV and potentially enhance our ability to fight future emerging CoV. [Brown, Ariane J.; Won, John J.; Graham, Rachel L.; Dinnon, Kenneth H., III; Sims, Amy C.; Baric, Ralph S.; Sheahan, Timothy P.] Univ N Carolina, Dept Epidemiol, Chapel Hill, NC 27515 USA; [Feng, Joy Y.; Cihlar, Tomas] Gilead Sci Inc, 353 Lakeside Dr, Foster City, CA 94404 USA; [Denison, Mark R.] Vanderbilt Univ, Med Ctr, Dept Pathol Microbiol & Immunol, Dept Pediat Infect Dis, Nashville, TN USA Sheahan, TP (reprint author), Univ N Carolina, Gillings Sch Global Publ Hlth, Dept Epidemiol, 135 Dauer Dr, Chapel Hill, NC 27599 USA. sheahan@email.unc.edu Sheahan, Timothy/J-8201-2019 Sheahan, Timothy/0000-0001-9181-2183 Antiviral Drug Discovery and Development Center [5U19AI109680]; National Institutes of Health (NIH), United StatesUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USA [5R01AI132178]; NIH National Institute of Allergy and Infectious Diseases virology training grant [T32 AI007419] We would like to acknowledge the following funding sources, Antiviral Drug Discovery and Development Center (5U19AI109680) and a partnership grant from the National Institutes of Health (NIH), United States (5R01AI132178). KD was supported by a fellowship from the NIH National Institute of Allergy and Infectious Diseases virology training grant (T32 AI007419). 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SEP 2019 169 UNSP 104541 10.1016/j.antiviral.2019.104541 10 Pharmacology & Pharmacy; Virology Pharmacology & Pharmacy; Virology JR9KI WOS:000499934800006 31233808 Green Published, Bronze 2020-04-01 J Xu, X; Yu, CC; Qu, J; Zhang, LG; Jiang, SF; Huang, DY; Chen, BH; Zhang, ZP; Guan, WH; Ling, ZK; Jiang, R; Hu, TL; Ding, Y; Lin, L; Gan, QX; Luo, LP; Tang, XP; Liu, JX Xu, Xi; Yu, Chengcheng; Qu, Jing; Zhang, Lieguang; Jiang, Songfeng; Huang, Deyang; Chen, Bihua; Zhang, Zhiping; Guan, Wanhua; Ling, Zhoukun; Jiang, Rui; Hu, Tianli; Ding, Yan; Lin, Lin; Gan, Qingxin; Luo, Liangping; Tang, Xiaoping; Liu, Jinxin Imaging and clinical features of patients with 2019 novel coronavirus SARS-CoV-2 EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING English Article; Early Access 2019 novel coronavirus pneumonia; COVID-19; SARS-CoV-2; Infection; Imaging features; Computed tomography; Ground glass opacification PNEUMONIA Background The pneumonia caused by the 2019 novel coronavirus (SARS-CoV-2, also called 2019-nCoV) recently break out in Wuhan, China, and was named as COVID-19. With the spread of the disease, similar cases have also been confirmed in other regions of China. We aimed to report the imaging and clinical characteristics of these patients infected with SARS-CoV-2 in Guangzhou, China. Methods All patients with laboratory-identified SARS-CoV-2 infection by real-time polymerase chain reaction (PCR) were collected between January 23, 2020, and February 4, 2020, in a designated hospital (Guangzhou Eighth People's Hospital). This analysis included 90 patients (39 men and 51 women; median age, 50 years (age range, 18-86 years). All the included SARS-CoV-2-infected patients underwent non-contrast enhanced chest computed tomography (CT). We analyzed the clinical characteristics of the patients, as well as the distribution characteristics, pattern, morphology, and accompanying manifestations of lung lesions. In addition, after 1-6 days (mean 3.5 days), follow-up chest CT images were evaluated to assess radiological evolution. Findings The majority of infected patients had a history of exposure in Wuhan or to infected patients and mostly presented with fever and cough. More than half of the patients presented bilateral, multifocal lung lesions, with peripheral distribution, and 53 (59%) patients had more than two lobes involved. Of all included patients, COVID-19 pneumonia presented with ground glass opacities in 65 (72%), consolidation in 12 (13%), crazy paving pattern in 11 (12%), interlobular thickening in 33 (37%), adjacent pleura thickening in 50 (56%), and linear opacities combined in 55 (61%). Pleural effusion, pericardial effusion, and lymphadenopathy were uncommon findings. In addition, baseline chest CT did not show any abnormalities in 21 patients (23%), but 3 patients presented bilateral ground glass opacities on the second CT after 3-4 days. Conclusion SARS-CoV-2 infection can be confirmed based on the patient's history, clinical manifestations, imaging characteristics, and laboratory tests. Chest CT examination plays an important role in the initial diagnosis of the novel coronavirus pneumonia. Multiple patchy ground glass opacities in bilateral multiple lobular with periphery distribution are typical chest CT imaging features of the COVID-19 pneumonia. [Xu, Xi; Luo, Liangping] Jinan Univ, Dept Med Imaging Ctr, Affiliated Hosp 1, 613,Huangpu Rd West, Guangzhou 510630, Guangdong, Peoples R China; [Yu, Chengcheng; Qu, Jing; Zhang, Lieguang; Jiang, Songfeng; Huang, Deyang; Chen, Bihua; Zhang, Zhiping; Guan, Wanhua; Ling, Zhoukun; Jiang, Rui; Hu, Tianli; Ding, Yan; Lin, Lin; Gan, Qingxin; Tang, Xiaoping; Liu, Jinxin] Guangzhou Med Univ, Guangzhou Peoples Hosp 8, Dept Radiol, 8,Huaying Rd, Guangzhou 510060, Guangdong, Peoples R China Luo, LP (reprint author), Jinan Univ, Dept Med Imaging Ctr, Affiliated Hosp 1, 613,Huangpu Rd West, Guangzhou 510630, Guangdong, Peoples R China.; Tang, XP; Liu, JX (reprint author), Guangzhou Med Univ, Guangzhou Peoples Hosp 8, Dept Radiol, 8,Huaying Rd, Guangzhou 510060, Guangdong, Peoples R China. tluolp@jnu.edu.cn; xtang@21cn.com; Liujx83710378@126.com Chan JFW, 2020, LANCET, V395, P514, DOI 10.1016/S0140-6736(20)30154-9; Chen NS, 2020, LANCET, V395, P507, DOI 10.1016/S0140-6736(20)30211-7; Chong S, 2010, BRIT J RADIOL, V83, P585, DOI 10.1259/bjr/51409455; Chung M, 2020, RADIOLOGY, V295, P202, DOI 10.1148/radiol.2020200230; Cui J, 2019, NAT REV MICROBIOL, V17, P181, DOI 10.1038/s41579-018-0118-9; Das KM, 2016, AM J ROENTGENOL, V206, P1193, DOI 10.2214/AJR.15.15363; Hansell DM, 2008, RADIOLOGY, V246, P697, DOI 10.1148/radiol.2462070712; Heymann DL, 2020, LANCET, V395, P469, DOI 10.1016/S0140-6736(20)30184-7; Huang CL, 2020, LANCET, V395, P497, DOI 10.1016/S0140-6736(20)30183-5; Koo HJ, 2018, RADIOGRAPHICS, V38, P719, DOI 10.1148/rg.2018170048; Ooi GC, 2003, RESPIROLOGY, V8, pS15, DOI 10.1046/j.1440-1843.2003.00519.x; Richman DD, 2016, CLIN VIROLOGY; Su S, 2016, TRENDS MICROBIOL, V24, P490, DOI 10.1016/j.tim.2016.03.003; Xu XT, 2020, SCI CHINA LIFE SCI, V63, P457, DOI 10.1007/s11427-020-1637-5; Zhu N, 2020, NEW ENGL J MED, V382, P727, DOI 10.1056/NEJMoa2001017 15 0 0 65 65 SPRINGER NEW YORK ONE NEW YORK PLAZA, SUITE 4600, NEW YORK, NY, UNITED STATES 1619-7070 1619-7089 EUR J NUCL MED MOL I Eur. J. Nucl. Med. Mol. Imaging 10.1007/s00259-020-04735-9 FEB 2020 6 Radiology, Nuclear Medicine & Medical Imaging Radiology, Nuclear Medicine & Medical Imaging KQ4YX WOS:000516931000001 32107577 Bronze 2020-04-01 J Yoshizawa, S; Hattori, Y; Kobayashi, K; Akaji, K Yoshizawa, Shin-ichiro; Hattori, Yasunao; Kobayashi, Kazuya; Akaji, Kenichi Evaluation of an octahydroisochromene scaffold used as a novel SARS 3CL protease inhibitor BIOORGANIC & MEDICINAL CHEMISTRY English Article SARS 3CL protease; Inhibitor; Fused ring scaffold; Octahydroisochromene ACUTE RESPIRATORY SYNDROME; CORONAVIRUS; DIHYDROXYLATION An octahydroisochromene scaffold has been introduced into a known SARS 3CL protease inhibitor as a novel hydrophobic core to interact with the S2 pocket of the protease. An alkyl or aryl substituent was also introduced at the 1-position of the octahydroisochromene scaffold and expected to introduce additional interactions with the protease. Sharpless-Katsuki asymmetric epoxidation and Sharpless asymmetric dihydroxylation were employed to construct the octahydroisochromene scaffold. The introductions of the P1 site His-al and the substituent at 1-position was achieved using successive reductive amination reactions. Our initial evaluations of the diastereo-isomeric mixtures (16a-d) revealed that the octahydroisochromene moiety functions as a core hydrophobic scaffold for the S2 pocket of the protease and the substituent at the 1-position may form additional interactions with the protease. The inhibitory activities of the diastereoisomerically-pure inhibitors (3a-d) strongly suggest that a specific stereo-isomer of the octahydroisochromene scaffold, (1S, 3S) 3b, directs the P1 site imidazole, the warhead aldehyde, and substituent at the 1-position of the fused ring to their appropriate pockets in the protease. [Yoshizawa, Shin-ichiro; Kobayashi, Kazuya; Akaji, Kenichi] Kyoto Pharmaceut Univ, Dept Med Chem, Yamashina Ku, Kyoto 6078412, Japan; [Hattori, Yasunao] Kyoto Pharmaceut Univ, Ctr Instrumental Anal, Yamashina Ku, Kyoto 6078412, Japan Akaji, K (reprint author), Kyoto Pharmaceut Univ, Dept Med Chem, Kyoto 6078412, Japan. akaji@mb.kyoto-phu.ac.jp Japan Society for the Promotion of ScienceMinistry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science [16H05104] This work was supported, in part, by a Grant-in-aid for Scientific Research 16H05104 given to KA from the Japan Society for the Promotion of Science. 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FEB 15 2020 28 4 115273 10.1016/j.bmc.2019.115273 11 Biochemistry & Molecular Biology; Chemistry, Medicinal; Chemistry, Organic Biochemistry & Molecular Biology; Pharmacology & Pharmacy; Chemistry KF8CA WOS:000509463700004 31926775 2020-04-01 J Xu, XW; Wu, XX; Jiang, XG; Xu, KJ; Ying, LJ; Ma, CL; Li, SB; Wang, HY; Zhang, S; Gao, HN; Sheng, JF; Cai, HL; Qiu, YQ; Li, LJ Xu, Xiao-Wei; Wu, Xiao-Xin; Jiang, Xian-Gao; Xu, Kai-Jin; Ying, Ling-Jun; Ma, Chun-Lian; Li, Shi-Bo; Wang, Hua-Ying; Zhang, Sheng; Gao, Hai-Nv; Sheng, Ji-Fang; Cai, Hong-Liu; Qiu, Yun-Qing; Li, Lan-Juan Clinical findings in a group of patients infected with the 2019 novel coronavirus (SARS-Cov-2) outside of Wuhan, China: retrospective case series BMJ-BRITISH MEDICAL JOURNAL English Article OBJECTIVE To study the clinical characteristics of patients in Zhejiang province, China, infected with the 2019 severe acute respiratory syndrome coronavirus 2 (SARS-Cov-2) responsible for coronavirus disease 2019 (covid-2019). DESIGN Retrospective case series. SETTING Seven hospitals in Zhejiang province, China. PARTICIPANTS 62 patients admitted to hospital with laboratory confirmed SARS-Cov-2 infection. Data were collected from 10 January 2020 to 26 January 2020. MAIN OUTCOME MEASURES Clinical data, collected using a standardised case report form, such as temperature, history of exposure, incubation period. If information was not clear, the working group in Hangzhou contacted the doctor responsible for treating the patient for clarification. RESULTS Of the 62 patients studied (median age 41 years), only one was admitted to an intensive care unit, and no patients died during the study. According to research, none of the infected patients in Zhejiang province were ever exposed to the Huanan seafood market, the original source of the virus; all studied cases were infected by human to human transmission. The most common symptoms at onset of illness were fever in 48 (77%) patients, cough in 50 (81%), expectoration in 35 (56%), headache in 21 (34%), myalgia or fatigue in 32 (52%), diarrhoea in 3 (8%), and haemoptysis in 2 (3%). Only two patients (3%) developed shortness of breath on admission. The median time from exposure to onset of illness was 4 days (interquartile range 3-5 days), and from onset of symptoms to first hospital admission was 2 (1-4) days. CONCLUSION As of early February 2020, compared with patients initially infected with SARS-Cov-2 in Wuhan, the symptoms of patients in Zhejiang province are relatively mild. [Xu, Xiao-Wei; Wu, Xiao-Xin; Xu, Kai-Jin; Sheng, Ji-Fang; Cai, Hong-Liu; Qiu, Yun-Qing; Li, Lan-Juan] Zhejiang Univ, Affiliated Hosp 1, Coll Med,State Key Lab Diag & Treatment Infect Di, Natl Clin Res Ctr Infect Dis,Collaborat Innovat C, Hangzhou 310003, Zhejiang, Peoples R China; [Jiang, Xian-Gao] Wenzhou Cent Hosp, Dept Infect Dis, Wenzhou, Zhejiang, Peoples R China; [Ying, Ling-Jun] Enze Hosp, Taizhou Enze Med Ctr Grp, Dept Infect Dis, Taizhou, Zhejiang, Peoples R China; [Ma, Chun-Lian] First Peoples Hosp Wenling, Dept Infect Dis, Wenling, Zhejiang, Peoples R China; [Li, Shi-Bo] Wenzhou Med Univ, Affiliated Zhoushan Hosp, Dept Infect Dis, Zhoushan, Zhejiang, Peoples R China; [Wang, Hua-Ying] Ningbo Univ, Affiliated Yinzhou Hosp, Yinzhou Peoples Hosp, Coll Med,Dept Resp & Crit Care Med, Ningbo, Zhejiang, Peoples R China; [Zhang, Sheng] Taizhou Hosp, Dept Infect Dis, Taizhou, Zhejiang, Peoples R China; [Gao, Hai-Nv] Zhejiang Shuren Univ, ShuLan Hangzhou Hosp, Shulan Int Med Coll, Dept Infect Dis, Hangzhou, Zhejiang, Peoples R China Li, LJ (reprint author), Zhejiang Univ, Affiliated Hosp 1, Coll Med,State Key Lab Diag & Treatment Infect Di, Natl Clin Res Ctr Infect Dis,Collaborat Innovat C, Hangzhou 310003, Zhejiang, Peoples R China. ljli@zju.edu.cn Chan JFW, 2020, LANCET, V395, P514, DOI 10.1016/S0140-6736(20)30154-9; Chen NS, 2020, LANCET, V395, P507, DOI 10.1016/S0140-6736(20)30211-7; Chu CM, 2004, THORAX, V59, P252, DOI 10.1136/thorax.2003.012658; de Groot RJ, 2013, J VIROL, V87, P7790, DOI 10.1128/JVI.01244-13; Huang CL, 2020, LANCET, V395, P497, DOI 10.1016/S0140-6736(20)30183-5; Ji W, 2020, J MED VIROL, V92, P433, DOI 10.1002/jmv.25682; Kim KH, 2017, J HOSP INFECT, V95, P207, DOI 10.1016/j.jhin.2016.10.008; Lu HZ, 2020, J MED VIROL, V92, P401, DOI 10.1002/jmv.25678; Lu RJ, 2020, LANCET, V395, P565, DOI 10.1016/S0140-6736(20)30251-8; World Health Organization, 2019, MIDDL E RESP SYNDR C; World Health Organization, 2020, NOV COR 2019 NCOV SI; World Health Organization, MIDDL E RESP SYNDR C; World Health Organization, 2020, CLIN MAN SEV AC RESP; Xu XT, 2020, SCI CHINA LIFE SCI, V63, P457, DOI 10.1007/s11427-020-1637-5; Zaki AM, 2012, NEW ENGL J MED, V367, P1814, DOI 10.1056/NEJMoa1211721 15 2 2 62 62 BMJ PUBLISHING GROUP LONDON BRITISH MED ASSOC HOUSE, TAVISTOCK SQUARE, LONDON WC1H 9JR, ENGLAND 1756-1833 BMJ-BRIT MED J BMJ-British Medical Journal FEB 19 2020 368 m606 10.1136/bmj.m606 7 Medicine, General & Internal General & Internal Medicine KO0KS WOS:000515235300008 32075786 Other Gold 2020-04-01 J Baruah, V; Bose, S Baruah, Vargab; Bose, Sujoy Immunoinformatics-aided identification of T cell and B cell epitopes in the surface glycoprotein of 2019-nCoV JOURNAL OF MEDICAL VIROLOGY English Article 2019-nCoV; coronavirus; COVID-19; epitope prediction; immunoinformatics; SARS-CoV-2 PREDICTION; PROTEIN; EVOLUTION The 2019 novel coronavirus (2019-nCoV) outbreak has caused a large number of deaths with thousands of confirmed cases worldwide, especially in East Asia. This study took an immunoinformatics approach to identify significant cytotoxic T lymphocyte (CTL) and B cell epitopes in the 2019-nCoV surface glycoprotein. Also, interactions between identified CTL epitopes and their corresponding major histocompatibility complex (MHC) class I supertype representatives prevalent in China were studied by molecular dynamics simulations. We identified five CTL epitopes, three sequential B cell epitopes and five discontinuous B cell epitopes in the viral surface glycoprotein. Also, during simulations, the CTL epitopes were observed to be binding MHC class I peptide-binding grooves via multiple contacts, with continuous hydrogen bonds and salt bridge anchors, indicating their potential in generating immune responses. Some of these identified epitopes can be potential candidates for the development of 2019-nCoV vaccines. 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FEB 15 2020 201 4 P7 P8 2 Critical Care Medicine; Respiratory System General & Internal Medicine; Respiratory System KM5GK WOS:000514164200001 32004066 Bronze 2020-04-01 J Xu, XT; Chen, P; Wang, JF; Feng, JN; Zhou, H; Li, X; Zhong, W; Hao, P Xu, Xintian; Chen, Ping; Wang, Jingfang; Feng, Jiannan; Zhou, Hui; Li, Xuan; Zhong, Wu; Hao, Pei Evolution of the novel coronavirus from the ongoing Wuhan outbreak and modeling of its spike protein for risk of human transmission SCIENCE CHINA-LIFE SCIENCES English Letter RECEPTOR [Xu, Xintian; Hao, Pei] Chinese Acad Sci, Inst Pasteur Shanghai, Ctr Biosafety Mega Sci, Key Lab Mol Virol & Immunol, Shanghai 200031, Peoples R China; [Chen, Ping; Zhou, Hui; Li, Xuan] Chinese Acad Sci, CAS Ctr Excellence Mol Plant Sci, Key Lab Synthet Biol, Shanghai 200032, Peoples R China; [Wang, Jingfang] Shanghai Jiao Tong Univ, Shanghai Ctr Syst Biomed, Key Lab Syst Biomed, Minist Educ, Shanghai 200240, Peoples R China; [Feng, Jiannan; Zhong, Wu] Beijing Inst Pharmacol & Toxicol, Natl Engn Res Ctr Emergence Drugs, Beijing 100850, Peoples R China; [Chen, Ping; Hao, Pei] Guangzhou Med Univ, Guangzhou Women & Childrens Med Ctr, Joint Program Infect & Immun, Guangzhou 510623, Guangdong, Peoples R China; [Chen, Ping; Hao, Pei] Chinese Acad Sci, Inst Pasteur Shanghai, Joint Program Infect & Immun, Shanghai 200031, Peoples R China Hao, P (reprint author), Chinese Acad Sci, Inst Pasteur Shanghai, Ctr Biosafety Mega Sci, Key Lab Mol Virol & Immunol, Shanghai 200031, Peoples R China.; Li, X (reprint author), Chinese Acad Sci, CAS Ctr Excellence Mol Plant Sci, Key Lab Synthet Biol, Shanghai 200032, Peoples R China.; Zhong, W (reprint author), Beijing Inst Pharmacol & Toxicol, Natl Engn Res Ctr Emergence Drugs, Beijing 100850, Peoples R China.; Hao, P (reprint author), Guangzhou Med Univ, Guangzhou Women & Childrens Med Ctr, Joint Program Infect & Immun, Guangzhou 510623, Guangdong, Peoples R China.; Hao, P (reprint author), Chinese Acad Sci, Inst Pasteur Shanghai, Joint Program Infect & Immun, Shanghai 200031, Peoples R China. lixuan@sippe.ac.cn; zhongwu@bmi.ac.cn; phao@ips.ac.cn National Science and Technology Major Projects for "Major New Drugs Innovation and Development" of China [2018ZX09711003]; National Key R&D Program of China [2018YFC0310600]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China [31771412]; Special Fund for strategic bio-resources from Chinese Academy of Sciences [ZSYS-014] This work was supported in part by grants from the National Science and Technology Major Projects for "Major New Drugs Innovation and Development" (directed by Dr. Song Li) (2018ZX09711003) of China, the National Key R&D Program (2018YFC0310600) of China, the National Natural Science Foundation of China (31771412), and Special Fund for strategic bio-resources from Chinese Academy of Sciences (ZSYS-014). We also acknowledge the National Institute for Viral Disease Control and Prevention, China CDC; Wuhan Institute of Virology, Chinese Academy of Sciences; Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College; and Wuhan Jinyintan Hospital for their efforts in research and collecting the data and genome sequencing sharing. In addition, we acknowledge GISAID (https://www.gisaid.org/) for facilitating open data sharing. 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MAR 2020 63 3 457 460 10.1007/s11427-020-1637-5 JAN 2020 4 Biology Life Sciences & Biomedicine - Other Topics KU1DB WOS:000510426500001 32009228 Bronze 2020-04-01 J Li, GD; De Clercq, E Li, Guangdi; De Clercq, Erik Therapeutic options for the 2019 novel coronavirus (2019-nCoV) NATURE REVIEWS DRUG DISCOVERY English Editorial Material Therapeutic options in response to the 2019-nCoV outbreak are urgently needed. Here, we discuss the potential for repurposing existing antiviral agents to treat 2019-nCoV infection (now known as COVID-19), some of which are already moving into clinical trials. [Li, Guangdi] Cent South Univ, Xiangya Sch Publ Hlth, Dept Epidemiol & Hlth Stat, Changsha, Peoples R China; [De Clercq, Erik] Katholieke Univ Leuven, Rega Inst Med Res, Dept Microbiol Immunol & Transplantat, Leuven, Belgium Li, GD (reprint author), Cent South Univ, Xiangya Sch Publ Hlth, Dept Epidemiol & Hlth Stat, Changsha, Peoples R China.; De Clercq, E (reprint author), Katholieke Univ Leuven, Rega Inst Med Res, Dept Microbiol Immunol & Transplantat, Leuven, Belgium. liguangdi.research@gmail.com; erik.declercq@kuleuven.be National Nature Science Foundation of ChinaNational Natural Science Foundation of China [31571368, 31871324, 81730064]; National Science and Technology Major Project [2018ZX10715004]; Natural Science Foundation of Hunan ProvinceNatural Science Foundation of Hunan Province [2018JJ3713]; Hunan Youth Elite Project [2018RS3006]; Project of Innovation-Driven Plan of Central South University [2016CX031] We would like to thank P. Kirkpatrick for his critical comments and editorial assistance to improve this article. This work was supported by the National Nature Science Foundation of China (grant numbers 31571368, 31871324 and 81730064), the National Science and Technology Major Project (grant number 2018ZX10715004), the Natural Science Foundation of Hunan Province (grant number 2018JJ3713), the Hunan Youth Elite Project (grant number 2018RS3006) and the Project of Innovation-Driven Plan of Central South University (grant 2016CX031). 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MAR 2020 19 3 149 150 10.1038/d41573-020-00016-0 2 Biotechnology & Applied Microbiology; Pharmacology & Pharmacy Biotechnology & Applied Microbiology; Pharmacology & Pharmacy KS2PH WOS:000518151800001 32127666 Bronze 2020-04-01 J Liu, J; Zheng, X; Tong, QX; Li, W; Wang, BJ; Sutter, K; Trilling, M; Lu, MJ; Dittmer, U; Yang, DL Liu, Jia; Zheng, Xin; Tong, Qiaoxia; Li, Wei; Wang, Baoju; Sutter, Kathrin; Trilling, Mirko; Lu, Mengji; Dittmer, Ulf; Yang, Dongliang Overlapping and discrete aspects of the pathology and pathogenesis of the emerging human pathogenic coronaviruses SARS-CoV, MERS-CoV, and 2019-nCoV JOURNAL OF MEDICAL VIROLOGY English Review coronavirus; immnopathology; immune responses; pathogenesis; respiratory tract; virus classification RESPIRATORY SYNDROME CORONAVIRUS; IN-SITU HYBRIDIZATION; INFLAMMATORY CYTOKINES; INTERFERON; PNEUMONIA; INFECTION; REPLICATION; CHEMOKINES; RESPONSES; OUTBREAK First reported from Wuhan, The People's Republic of China, on 31 December 2019, the ongoing outbreak of a novel coronavirus (2019-nCoV) causes great global concerns. Based on the advice of the International Health Regulations Emergency Committee and the fact that to date 24 other countries also reported cases, the WHO Director-General declared that the outbreak of 2019-nCoV constitutes a Public Health Emergency of International Concern on 30 January 2020. Together with the other two highly pathogenic coronaviruses, the severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV), 2019-nCov and other yet to be identified coronaviruses pose a global threat to public health. In this mini-review, we provide a brief introduction to the pathology and pathogenesis of SARS-CoV and MERS-CoV and extrapolate this knowledge to the newly identified 2019-nCoV. [Liu, Jia; Zheng, Xin; Tong, Qiaoxia; Li, Wei; Wang, Baoju; Yang, Dongliang] Huazhong Univ Sci & Technol, Tongji Med Coll, Union Hosp, Dept Infect Dis, Wuhan 430022, Hubei, Peoples R China; [Sutter, Kathrin; Trilling, Mirko; Lu, Mengji; Dittmer, Ulf] Univ Duisburg Essen, Univ Hosp Essen, Inst Virol, Essen, Germany; [Liu, Jia; Zheng, Xin; Wang, Baoju; Sutter, Kathrin; Trilling, Mirko; Lu, Mengji; Dittmer, Ulf; Yang, Dongliang] Huazhong Univ Sci & Technol, Joint Int Lab Infect & Immun, Wuhan, Hubei, Peoples R China Liu, J; Yang, DL (reprint author), Huazhong Univ Sci & Technol, Tongji Med Coll, Union Hosp, Dept Infect Dis, Wuhan 430022, Hubei, Peoples R China. jialiu77@hust.edu.cn; dlyang@hust.edu.cn Ribeiro, Nuno/AAH-2299-2020 Liu, Jia/0000-0002-8262-4997 National Scientific and Technological Major Project of China [2017ZX10202203]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China [81861138044, 91742114, 91642118] National Scientific and Technological Major Project of China, Grant/Award Number: 2017ZX10202203; National Natural Science Foundation of China, Grant/Award Numbers: 81861138044, 91742114, 91642118 Alsaad KO, 2018, HISTOPATHOLOGY, V72, P516, DOI 10.1111/his.13379; Bradley BT, 2019, SEMIN DIAGN PATHOL, V36, P152, DOI 10.1053/j.semdp.2019.04.006; Cameron MJ, 2007, J VIROL, V81, P8692, DOI 10.1128/JVI.00527-07; Cha RH, 2016, J KOREAN MED SCI, V31, P635, DOI 10.3346/jkms.2016.31.4.635; Chan JFW, 2020, LANCET, V395, P514, DOI 10.1016/S0140-6736(20)30154-9; Channappanavar R, 2016, CELL HOST MICROBE, V19, P181, DOI 10.1016/j.chom.2016.01.007; Chen NS, 2020, LANCET, V395, P507, DOI 10.1016/S0140-6736(20)30211-7; Chen Y, 2020, J MED VIROL, V92, P418, DOI 10.1002/jmv.25681; Chien JY, 2006, RESPIROLOGY, V11, P715, DOI 10.1111/j.1440-1843.2006.00942.x; Chu H, 2016, J INFECT DIS, V213, P904, DOI 10.1093/infdis/jiv380; Chu H, 2014, VIROLOGY, V454, P197, DOI 10.1016/j.virol.2014.02.018; Ding YQ, 2003, J PATHOL, V200, P282, DOI 10.1002/path.1440; Gu J, 2005, J EXP MED, V202, P415, DOI 10.1084/jem.20050828; Huang CL, 2020, LANCET, V395, P497, DOI 10.1016/S0140-6736(20)30183-5; Huang KJ, 2005, J MED VIROL, V75, P185, DOI 10.1002/jmv.20255; Kong SL, 2009, VIRUS RES, V145, P260, DOI 10.1016/j.virusres.2009.07.014; Kupferschmidt K, 2013, SCIENCE, V341, P702, DOI 10.1126/science.341.6147.702; Li Qun, 2020, N Engl J Med, V382, P1199, DOI 10.1056/NEJMoa2001316; Li WD, 2005, SCIENCE, V310, P676, DOI 10.1126/science.1118391; Menachery VD, 2014, MBIO, V5, DOI 10.1128/mBio.01174-14; Meyerholz DK, 2016, AM J PATHOL, V186, P78, DOI 10.1016/j.ajpath.2015.09.014; Ng DL, 2016, AM J PATHOL, V186, P652, DOI 10.1016/j.ajpath.2015.10.024; Nicholls JM, 2003, LANCET, V361, P1773, DOI 10.1016/S0140-6736(03)13413-7; Peiris JSM, 2003, LANCET, V361, P1767, DOI 10.1016/S0140-6736(03)13412-5; Ren LL, 2020, CHIN MED J, P1; Shieh WJ, 2005, HUM PATHOL, V36, P303, DOI 10.1016/j.humpath.2004.11.006; Song ZQ, 2019, VIRUSES-BASEL, V11, DOI 10.3390/v11010059; To K, 2004, J PATHOL, V202, P157, DOI 10.1002/path.1510; Walker DH, 2016, AM J PATHOL, V186, P507, DOI 10.1016/j.ajpath.2015.11.001; Wang C, 2020, LANCET, V395, P470, DOI 10.1016/S0140-6736(20)30185-9; Widagdo W, 2016, J VIROL, V90, P4838, DOI 10.1128/JVI.02994-15; Wong CK, 2004, CLIN EXP IMMUNOL, V136, P95, DOI 10.1111/j.1365-2249.2004.02415.x; Yeung ML, 2016, NAT MICROBIOL, V1, DOI [10.1038/NMICROBIOL.2016.4, 10.1038/nmicrobiol.2016.4]; Zhang YC, 2004, INFECT IMMUN, V72, P4410, DOI 10.1128/IAI.72.8.4410-4415.2004; Zhou J, 2014, J INFECT DIS, V209, P1331, DOI 10.1093/infdis/jit504; Zhou P, 2020, NATURE, DOI 10.1038/s41586-020-2012-7; Zhu N, 2020, NEW ENGL J MED, V382, P727, DOI 10.1056/NEJMoa2001017 37 0 0 57 57 WILEY HOBOKEN 111 RIVER ST, HOBOKEN 07030-5774, NJ USA 0146-6615 1096-9071 J MED VIROL J. Med. Virol. MAY 2020 92 5 491 494 10.1002/jmv.25709 FEB 2020 4 Virology Virology KU3AY WOS:000514677000001 32056249 Bronze 2020-04-01 J Eurosurveillance Editorial Team Note from the editors: novel coronavirus (2019-nCoV) EUROSURVEILLANCE English Editorial Material At the end of 2019, on 31 December, the World Health Organization (WHO) Country Office in China was informed of cases of pneumonia of unknown aetiology that had been detected in Wuhan, a city in the province of Hubei. Just a day earlier, on 30 December, ProMED-mail published a post calling for more information about 'A cluster of undiagnosed pneumonia China (Hubei)'. The post indicated that there had been some 20 patients diagnosed with 'atypical pneumonia' with seven of them being severely ill [1]. In their accompanying note, the post's moderator stated 'the type of social media activity that is now surrounding this event, is very reminiscent of the original "rumors" that accompanied the SARS-CoV outbreak.' [Ed. severe acute respiratory syndrome (SARS) coronavirus outbreak in 2003]. [Eurosurveillance Editorial Team] European Ctr Dis Prevent & Control ECDC, Stockholm, Sweden European Ctr Dis Prevent & Control ECDC, Stockholm, Sweden. 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Rev. Microbiol. MAR 2020 18 3 123 123 10.1038/s41579-020-0332-0 1 Microbiology Microbiology KM4YW WOS:000514142000002 31988490 Bronze 2020-04-01 J Rubin, EJ; Baden, LR; Morrissey, S; Campion, EW Rubin, Eric J.; Baden, Lindsey R.; Morrissey, Stephen; Campion, Edward W. Medical Journals and the 2019-nCoV Outbreak NEW ENGLAND JOURNAL OF MEDICINE English Editorial Material The editors announce expedited handling for submitted manuscripts describing the 2019-nCoV outbreak and make broad recommendations for speed, transparency, and data sharing. 0 0 0 55 55 MASSACHUSETTS MEDICAL SOC WALTHAM WALTHAM WOODS CENTER, 860 WINTER ST,, WALTHAM, MA 02451-1413 USA 0028-4793 1533-4406 NEW ENGL J MED N. Engl. J. Med. FEB 27 2020 382 9 866 866 10.1056/NEJMe2001329 1 Medicine, General & Internal General & Internal Medicine KS8TT WOS:000518581500013 31986242 Bronze 2020-04-01 J Huang, C; Wang, Y; Li, X Huang, C.; Wang, Y.; Li, X. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China (vol 395, pg 497, 2020) LANCET English Correction Huang CL, 2020, LANCET, V395, P497, DOI 10.1016/S0140-6736(20)30183-5 1 0 0 55 55 ELSEVIER SCIENCE INC NEW YORK STE 800, 230 PARK AVE, NEW YORK, NY 10169 USA 0140-6736 1474-547X LANCET Lancet FEB 15 2020 395 10223 496 496 10.1016/S0140-6736(20)30252-X 1 Medicine, General & Internal General & Internal Medicine KN1CG WOS:000514576900031 Bronze 2020-04-01 J Lu, HZ Lu, Hongzhou Drug treatment options for the 2019-new coronavirus (2019-nCoV) BIOSCIENCE TRENDS English Article 2019-nCoV; Coronaviruses; pneumonia RESPIRATORY SYNDROME CORONAVIRUS As of January 22, 2020, a total of 571 cases of the 2019-new coronavirus (2019-nCoV) have been reported in 25 provinces (districts and cities) in China. At present, there is no vaccine or antiviral treatment for human and animal coronavirus, so that identifying the drug treatment options as soon as possible is critical for the response to the 2019-nCoV outbreak. Three general methods, which include existing broad-spectrum antiviral drugs using standard assays, screening of a chemical library containing many existing compounds or databases, and the redevelopment of new specific drugs based on the genome and biophysical understanding of individual coronaviruses, are used to discover the potential antiviral treatment of human pathogen coronavirus. Lopinavir /Ritonavir, Nucleoside analogues, Neuraminidase inhibitors, Remdesivir, peptide (EK1), arbidol, RNA synthesis inhibitors (such as TDF, 3TC), anti-inflammatory drugs (such as hormones and other molecules), Chinese traditional medicine, such ShuFengJieDu Capsules and Lianhuaqingwen Capsule, could be the drug treatment options for 2019-nCoV. However, the efficacy and safety of these drugs for 2019-nCoV still need to be further confirmed by clinical experiments. [Lu, Hongzhou] Fudan Univ, Sci Res Ctr, Shanghai Publ Hlth Clin Ctr, Shanghai, Peoples R China; [Lu, Hongzhou] Fudan Univ, Shanghai Publ Hlth Clin Ctr, Dept Infect Dis, Shanghai, Peoples R China; [Lu, Hongzhou] Fudan Univ, Dept Infect Dis, Huashan Hosp, Shanghai, Peoples R China Lu, HZ (reprint author), Fudan Univ, Shanghai Publ Hlth Clin Ctr, 2901 Caolang Rd, Shanghai 201508, Peoples R China. luhongzhou@fudan.edu.cn 13th Five-Year National Science and Technology Major Project from Ministry of Science and Technology of the People's Republic of China [2017ZX09304027] This research was funded by the 13th Five-Year National Science and Technology Major Project from Ministry of Science and Technology of the People's Republic of China (Grant No.: 2017ZX09304027). 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MAR 2020 4 3 283 283 10.1038/s41559-020-1150-5 FEB 2020 1 Ecology; Evolutionary Biology Environmental Sciences & Ecology; Evolutionary Biology KS0XI WOS:000514763000002 32080369 Bronze 2020-04-01 J Shi, ZH; Wang, WJ; Xu, ZX; Zhao, MM; Lan, YL Shi, Zhihai; Wang, Wenjia; Xu, Zhaoxue; Zhao, Mengmeng; Lan, Yali Detection and Molecular Characterization of BCoVs Circulating in Central China Based on the Full-length Spike Gene KAFKAS UNIVERSITESI VETERINER FAKULTESI DERGISI English Article BCoV; Spike gene; Phylogenetic analysis; China BOVINE CORONAVIRUS; DAIRY-CATTLE; DIARRHEA Bovine coronavirus (BCoV) is prevalent throughout the world and is an important aetiological agent of diarrhoea in new-born calves. However, little is known about the genetic diversity and molecular epidemiology of BCoV in China. In this study, a total of 127 faecal samples from diarrhoeic dairy calves from nine cities in Henan Province, Central China, were collected between 2017 and 2018 and evaluated by RTPCR for the N gene. BCoV was detected in 15% (19/127) of calves. In addition, the full-length sequence of the S gene from 13 representative BCoV strains was obtained and analysed. Sequencing results for the full-length S gene showed 97.3-97.5% nucleotide (nt) identity and 96.3-96.8% amino acid (aa) identity with the classical Mebus strain. Phylogenetic analysis based on the full-length S gene showed that the BCoV strains in this study clustered with Vietnamese and Cuban BCoV strains on a large branch of the tree. These results enrich the molecular characterization of the Chinese BCoV strains and provide the first large-scale epidemiological examination of the prevalence of BCoV in diarrhoeic calves in Henan Province, Central China. [Shi, Zhihai; Xu, Zhaoxue; Lan, Yali] Henan Acad Agr Sci, Inst Anim Husb & Vet, Zhengzhou 450002, Henan, Peoples R China; [Wang, Wenjia] Henan Univ Anim Husb & Econ, Coll Pharmaceut Engn, Zhengzhou 450046, Henan, Peoples R China; [Shi, Zhihai; Xu, Zhaoxue; Lan, Yali] Henan Key Lab Farm Anim Breeding & Nutr Regulat, Zhengzhou 450002, Henan, Peoples R China; [Zhao, Mengmeng] Foshan Univ, Sch Life Sci & Engn, Foshan 528225, Guangdong, Peoples R China Lan, YL (reprint author), Henan Acad Agr Sci, Inst Anim Husb & Vet, Zhengzhou 450002, Henan, Peoples R China.; Lan, YL (reprint author), Henan Key Lab Farm Anim Breeding & Nutr Regulat, Zhengzhou 450002, Henan, Peoples R China.; Zhao, MM (reprint author), Foshan Univ, Sch Life Sci & Engn, Foshan 528225, Guangdong, Peoples R China. mzhao8@tulane.edu; yali2005haonan@sina.com Key Program for Science and Technology Development of Henan [192102110074]; National Key Research and Development Program of China [2018YFD0501700]; National beef cattle industrial technology system [CARS-37]; Open Program for Buffalo research of Guangxi [SNKF-2015-03]; National Natural Science Foundation of China (NSFC)National Natural Science Foundation of China [31902279] This work was funded by the Key Program for Science and Technology Development of Henan (192102110074), the National Key Research and Development Program of China 2018YFD0501700), the National beef cattle industrial technology system (CARS-37), the Open Program for Buffalo research of Guangxi (SNKF-2015-03), as well as the National Natural Science Foundation of China (NSFC) (grants 31902279). 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MAR-APR 2020 26 2 181 186 10.9775/kvfd.2019.22678 6 Veterinary Sciences Veterinary Sciences KF0UR WOS:000508967700004 DOAJ Gold 2020-04-01 J [Anonymous] [Anonymous] Emerging understandings of 2019-nCoV LANCET English Editorial Material Ribeiro, Nuno/AAH-2299-2020 0 8 8 52 52 ELSEVIER SCIENCE INC NEW YORK STE 800, 230 PARK AVE, NEW YORK, NY 10169 USA 0140-6736 1474-547X LANCET Lancet FEB 1 2020 395 10221 311 311 10.1016/S0140-6736(20)30186-0 1 Medicine, General & Internal General & Internal Medicine KH7WI WOS:000510860200004 31986259 Bronze 2020-04-01 J Li, G; Fan, YH; Lai, YN; Han, TT; Li, ZH; Zhou, PW; Pan, P; Wang, WB; Hu, DW; Liu, XH; Zhang, QW; Wu, JG Li, Geng; Fan, Yaohua; Lai, Yanni; Han, Tiantian; Li, Zonghui; Zhou, Peiwen; Pan, Pan; Wang, Wenbiao; Hu, Dingwen; Liu, Xiaohong; Zhang, Qiwei; Wu, Jianguo Coronavirus infections and immune responses JOURNAL OF MEDICAL VIROLOGY English Review chemokine; coronavirus; cytokines; inflammation; interferon RESPIRATORY-SYNDROME-CORONAVIRUS; PATTERN-RECOGNITION RECEPTORS; GMP-AMP SYNTHASE; RIG-I; MERS-COV; T-CELLS; RNA-RECOGNITION; SPIKE PROTEIN; CYTOSOLIC DNA; MOUSE MODEL Coronaviruses (CoVs) are by far the largest group of known positive-sense RNA viruses having an extensive range of natural hosts. In the past few decades, newly evolved Coronaviruses have posed a global threat to public health. The immune response is essential to control and eliminate CoV infections, however, maladjusted immune responses may result in immunopathology and impaired pulmonary gas exchange. Gaining a deeper understanding of the interaction between Coronaviruses and the innate immune systems of the hosts may shed light on the development and persistence of inflammation in the lungs and hopefully can reduce the risk of lung inflammation caused by CoVs. In this review, we provide an update on CoV infections and relevant diseases, particularly the host defense against CoV-induced inflammation of lung tissue, as well as the role of the innate immune system in the pathogenesis and clinical treatment. 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Med. Virol. APR 2020 92 4 SI 424 432 10.1002/jmv.25685 FEB 2020 9 Virology Virology KM6QU WOS:000511535900001 31981224 Bronze 2020-04-01 J Ceraolo, C; Giorgi, FM Ceraolo, Carmine; Giorgi, Federico M. Genomic variance of the 2019-nCoV coronavirus JOURNAL OF MEDICAL VIROLOGY English Article biostatistics & bioinformatics; CLUSTAL analysis; coronavirus; data visualization; virus classification MULTIPLE SEQUENCE ALIGNMENT There is a rising global concern for the recently emerged novel coronavirus (2019-nCoV). Full genomic sequences have been released by the worldwide scientific community in the last few weeks to understand the evolutionary origin and molecular characteristics of this virus. Taking advantage of all the genomic information currently available, we constructed a phylogenetic tree including also representatives of other coronaviridae, such as Bat coronavirus (BCoV) and severe acute respiratory syndrome. We confirm high sequence similarity (>99%) between all sequenced 2019-nCoVs genomes available, with the closest BCoV sequence sharing 96.2% sequence identity, confirming the notion of a zoonotic origin of 2019-nCoV. Despite the low heterogeneity of the 2019-nCoV genomes, we could identify at least two hypervariable genomic hotspots, one of which is responsible for a Serine/Leucine variation in the viral ORF8-encoded protein. Finally, we perform a full proteomic comparison with other coronaviridae, identifying key aminoacidic differences to be considered for antiviral strategies deriving from previous anti-coronavirus approaches. 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MAY 2020 92 5 522 528 10.1002/jmv.25700 FEB 2020 7 Virology Virology KU3AY WOS:000517439500001 32027036 Bronze 2020-04-01 J Eickmann, M; Gravemann, U; Handke, W; Tolksdorf, F; Reichenberg, S; Muller, TH; Seltsam, A Eickmann, Markus; Gravemann, Ute; Handke, Wiebke; Tolksdorf, Frank; Reichenberg, Stefan; Mueller, Thomas H.; Seltsam, Axel Inactivation of three emerging viruses - severe acute respiratory syndrome coronavirus, Crimean-Congo haemorrhagic fever virus and Nipah virus - in platelet concentrates by ultraviolet C light and in plasma by methylene blue plus visible light VOX SANGUINIS English Article; Early Access ultraviolet light; methylene blue; pathogen inactivation; plasma; platelet concentrates FRESH-FROZEN PLASMA; PATHOGEN INACTIVATION; REDUCTION; SYSTEM; EPIDEMIOLOGY; TRANSMISSION; INFECTIVITY Background Emerging viruses like severe acute respiratory syndrome coronavirus (SARS-CoV), Crimean-Congo haemorrhagic fever virus (CCHFV) and Nipah virus (NiV) have been identified to pose a potential threat to transfusion safety. In this study, the ability of the THERAFLEX UV-Platelets and THERAFLEX MB-Plasma pathogen inactivation systems to inactivate these viruses in platelet concentrates and plasma, respectively, was investigated. Materials and methods Blood products were spiked with SARS-CoV, CCHFV or NiV, and then treated with increasing doses of UVC light (THERAFLEX UV-Platelets) or with methylene blue (MB) plus increasing doses of visible light (MB/light; THERAFLEX MB-Plasma). Samples were taken before and after treatment with each illumination dose and tested for residual infectivity. Results Treatment with half to three-fourths of the full UVC dose (0 center dot 2 J/cm(2)) reduced the infectivity of SARS-CoV (>= 3 center dot 4 log), CCHFV (>= 2 center dot 2 log) and NiV (>= 4 center dot 3 log) to the limit of detection (LOD) in platelet concentrates, and treatment with MB and a fourth of the full light dose (120 J/cm(2)) decreased that of SARS-CoV (>= 3 center dot 1 log), CCHFV (>= 3 center dot 2 log) and NiV (>= 2 center dot 7 log) to the LOD in plasma. Conclusion Our study demonstrates that both THERAFLEX UV-Platelets (UVC) and THERAFLEX MB-Plasma (MB/light) effectively reduce the infectivity of SARS-CoV, CCHFV and NiV in platelet concentrates and plasma, respectively. [Eickmann, Markus] Philipps Univ Marburg, Inst Virol, Marburg, Germany; [Gravemann, Ute; Handke, Wiebke; Mueller, Thomas H.; Seltsam, Axel] German Red Cross Blood Serv NSTOB, Springe, Germany; [Tolksdorf, Frank; Reichenberg, Stefan] Maco Pharma Int GmbH, Langen, Germany Seltsam, A (reprint author), German Red Cross Blood Serv NSTOB, Inst Springe, Eldagsener Str 38, D-31832 Springe, Germany. axel.seltsam@bsd-nstob.de Reichenberg, Stefan/AAB-3159-2020 Muller, Thomas H./0000-0002-5417-6787 German Red Cross Blood Services (Deutsche Forschungsgemeinschaft der Blutspendedienste des Deutschen Roten Kreuzes); Macopharma S.A.S. This work was supported by the German Red Cross Blood Services (Deutsche Forschungsgemeinschaft der Blutspendedienste des Deutschen Roten Kreuzes) and Macopharma S.A.S. 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To understand the humoral immune response elicited upon natural infections with coronaviruses, we structurally characterized the SARS-CoV and MERS-CoV S glycoproteins in complex with neutralizing antibodies isolated from human survivors. Although the two antibodies studied blocked attachment to the host cell receptor, only the anti-SARS-CoV S antibody triggered fusogenic conformational changes via receptor functional mimicry. These results provide a structural framework for understanding coronavirus neutralization by human antibodies and shed light on activation of coronavirus membrane fusion, which takes place through a receptor-driven ratcheting mechanism. [Walls, Alexandra C.; Xiong, Xiaoli; Park, Young-Jun; Tortorici, M. Alejandra; Snijder, Joost; Quispe, Joel; Veesler, David] Univ Washington, Dept Biochem, Seattle, WA 98195 USA; [Tortorici, M. Alejandra; Rey, Felix A.] Inst Pasteur, F-75015 Paris, France; [Tortorici, M. Alejandra; Rey, Felix A.] CNRS UMR 3569, Unite Virol Struct, F-75015 Paris, France; [Cameroni, Elisabetta; Corti, Davide] Humabs Biomed SA, Vir Biotechnol, CH-6500 Bellinzona, Switzerland; [Gopal, Robin; Zambon, Maria] Publ Hlth England, Natl Infect Serv, London NW9 5HT, England; [Dai, Mian] Francis Crick Inst, Crick Worldwide Influenza Ctr, 1 Midland Rd, London NW1 1AT, England; [Lanzavecchia, Antonio] Univ Svizzera italiana, Fac Biomed Sci, Inst Res Biomed, CH-6500 Bellinzona, Switzerland Veesler, D (reprint author), Univ Washington, Dept Biochem, Seattle, WA 98195 USA. dveesler@uw.edu Tortorici, M. Alejandra/0000-0002-2260-2577 National Institute of General Medical SciencesUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of General Medical Sciences (NIGMS) [R01GM120553]; National Institute of Allergy and Infectious DiseasesUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Allergy & Infectious Diseases (NIAID) [HHSN272201700059C]; Pew Biomedical Scholars Award; Burroughs Wellcome FundBurroughs Wellcome Fund; Netherlands Organisation for Scientific ResearchNetherlands Organization for Scientific Research (NWO) [Rubicon 019.2015.2.310.006]; European Molecular Biology OrganizationEuropean Molecular Biology Organization (EMBO) [ALTF933-2015]; Zoonoses Anticipation and Preparedness Initiative [IMI115760]; Pasteur Institute; Centre National de la Recherche ScientifiqueCentre National de la Recherche Scientifique (CNRS); LabEx Integrative Biology of Emerging Infectious Diseases; University of Washington Arnold and Mabel Beckman CryoEM Center and Proteomics Resource [UWPR95794]; beamline 5.0.1 at the Advanced Light Source at Lawrence Berkley National Laboratory We are grateful to Thomas Hinds and Ning Zheng for assistance with the crystallization robot and BLI device; to Jerome Cattin-Ortola, Irini Topalidou, and Michael Ailion for assistance with western blotting; and to Michelle Chen (Wyatt technology) for her help with the light scattering experiments. This study was supported by the National Institute of General Medical Sciences (R01GM120553, D.V.), the National Institute of Allergy and Infectious Diseases (HHSN272201700059C, D.V.), a Pew Biomedical Scholars Award (D.V.), an Investigators in the Pathogenesis of Infectious Disease Award from the Burroughs Wellcome Fund (D.V.), the Netherlands Organisation for Scientific Research (Rubicon 019.2015.2.310.006, J.S.), the European Molecular Biology Organization (ALTF933-2015, J.S.), the Zoonoses Anticipation and Preparedness Initiative (IMI115760, F.A.R.), the Pasteur Institute (M.A.T. and F.A.R.), the Centre National de la Recherche Scientifique (F.A.R.), the LabEx Integrative Biology of Emerging Infectious Diseases (F.A.R.), the University of Washington Arnold and Mabel Beckman CryoEM Center and Proteomics Resource (UWPR95794), and the beamline 5.0.1 at the Advanced Light Source at Lawrence Berkley National Laboratory. 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Spike glycoprotein (S) of MERS-CoV is a key target for vaccines and therapeutics because S mediates viral entry and membrane-fusion to host cells. Here, four different S subunit proteins, receptor-binding domain (RBD; 358-606 aa), S1 (1-751 aa), S2 (752-1296 aa), and S Delta TM (1-1296 aa), were generated using the baculoviral system and immunized in mice to develop neutralizing antibodies. We developed 77 hybridomas and selected five neutralizing mAbs by immunization with S Delta TM against MERS-CoV EMC/2012 strain S-pseudotyped lentivirus. However, all five monoclonal antibodies (mAb) did not neutralize the pseudotyped V534A mutation. Additionally, one mAb RBD-14F8 did not show neutralizing activity against pseudoviruses with amino acid substitution of L506 F or D509 G (Englandl strain, EMC/2012 L506 F, and EMC/2012 D509 G), and RBD-43E4 mAb could not neutralize the pseudotyped 1529 T mutation, while three other neutralizing mAbs showed broad neutralizing activity. This implies that the mutation in residue 506-509, 529, and 534 of S is critical to generate neutralization escape variants of MERS-CoV. Interestingly, all five neutralizing mAbs have binding affinity to RBD, although most mAbs generated by RBD did not have neutralizing activity. Additionally, chimeric antibodies of RBD-14F8 and RBD-43E4 with human Fc and light chain showed neutralizing effect against wild type MERS-CoV KOR/KNIH/002, similar to the original mouse mAbs. Thus, our mAbs can be utilized for the identification of specific mutations of MERS-CoV. [Goo, Junghyun; Jeong, Yuji; Park, Young-Shin; Yang, Eunji; Jung, Dae-Im; Rho, Semi; Choi, Jung-ah; Seo, Sang Hwan; Kim, Jae-Ouk; Song, Manki] Int Vaccine Inst, Sci Unit, Seoul, South Korea; [Park, Uni; Cho, Nam Hyuck] Dept Microbiol & Immunol, Seoul, South Korea; [Park, Uni; Cho, Nam Hyuck] Seoul Natl Univ, Coll Med, Dept Biomed Sci, Seoul, South Korea; [Cho, Nam Hyuck] Seoul Natl Univ, Inst Endem Dis, Med Res Ctr, Seoul, South Korea; [Cho, Nam Hyuck] Bundang Hosp, Seoul, South Korea; [Lee, Hyeja] NKMAX Co Ltd, Seongnam, South Korea; [Lee, Jae Myun] Yonsei Univ, Inst Immunol & Immunol Dis, Brain Korea PLUS Project Med Sci 21, Dept Microbiol & Immunol, Seoul, South Korea Kim, JO; Song, M (reprint author), Int Vaccine Inst, Sci Unit, Seoul, South Korea. jokim@ivi.int; mksong@ivi.int Ministry of Health and Welfare, Republic of KoreaMinistry of Health & Welfare, Republic of Korea [HI15C2971] This work was supported by a grant from the Ministry of Health and Welfare, Republic of Korea (HI15C2971). 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MAR 12 2020 278 197863 10.1016/j.virusres.2020.197863 10 Virology Virology KO3DZ WOS:000515429400011 31945421 Other Gold 2020-04-01 J Mowbray, H Mowbray, Heather Letter from China: covid-19 on the grapevine, on the internet, and in commerce BMJ-BRITISH MEDICAL JOURNAL English Editorial Material hcmowbray@gmail.com Ribeiro, Nuno/AAH-2299-2020 0 0 0 45 45 BMJ PUBLISHING GROUP LONDON BRITISH MED ASSOC HOUSE, TAVISTOCK SQUARE, LONDON WC1H 9JR, ENGLAND 1756-1833 BMJ-BRIT MED J BMJ-British Medical Journal FEB 19 2020 368 m643 10.1136/bmj.m643 2 Medicine, General & Internal General & Internal Medicine KO0KS WOS:000515235300013 32075783 Bronze 2020-04-01 J Kim, JH; Kang, M; Park, E; Chung, DR; Kim, J; Hwang, ES Kim, Jin Hwa; Kang, Minhee; Park, Eunkyoung; Chung, Doo Ryeon; Kim, Jiyeon; Hwang, Eung Soo A Simple and Multiplex Loop-Mediated Isothermal Amplification (LAMP) Assay for Rapid Detection of SARS-CoV BIOCHIP JOURNAL English Article SARS-CoV; Loop-mediated isothermal amplification; Colorimetric detection; Point-of-care test ACUTE-RESPIRATORY-SYNDROME; SYNDROME CORONAVIRUS The current diagnosis of severe acute respiratory syndrome-associated coronavirus (SARS-CoV) relies on laboratory-based tests since its clinical features are nonspecific, unlike other respiratory pathogens. Therefore, the development of a rapid and simple method for on-site detection of SARS-CoV is crucial for the identification and prevention of future SARS outbreaks. In this study, a simple colorimetric and multiplex loop-mediated isothermal amplification (LAMP) assay was developed to rapid screening of severe acute respiratory syndrome-associated coronavirus (SARS-CoV). It can be visually detected based on color change and monitored in real-time with fluorescent signals. The performance of this assay, based on six primers targeting open reading frame (ORF1b) and nucleocapsid (N) genes located in different regions of the SARS-CoV, was compared with real-time RT-PCR assay using various concentrations of target genes. The detection limit of the LAMP assay was comparable to that of real-time RT-PCR assay and therefore a few target RNA to 10(4)-10(5) copies could be detected within a short period of time (20-25 min). In addition, we established a multiplex real-time LAMP assay to simultaneously detect two target regions within the SARS-CoV genome. Two target sequences were amplified by specific primers in the same reaction tube and revealed that it was able to detect down to 10(5) copies. The standard curve had a linear relationship with similar amplification efficiencies. The LAMP assay results in shorter "sample-to-answer" time than conventional PCR method. Therefore, it is suitable not only for diagnosis of clinical test, but also for surveillance of SARS virus in developing countries. [Kim, Jin Hwa; Kang, Minhee; Park, Eunkyoung] Sungkyunkwan Univ, Biomed Engn Res Ctr, Samsung Med Ctr, Smart Healthcare Res Inst,Sch Med, Seoul, South Korea; [Kang, Minhee; Park, Eunkyoung] Sungkyunkwan Univ, Dept Med Device Management & Res, SAIHST, Seoul, South Korea; [Chung, Doo Ryeon] Samsung Med Ctr, Ctr Infect Prevent & Control, Seoul, South Korea; [Chung, Doo Ryeon] APFID, Seoul, South Korea; [Chung, Doo Ryeon] Sungkyunkwan Univ, Samsung Med Ctr, Dept Internal Med, Div Infect Dis,Sch Med, Seoul, South Korea; [Kim, Jiyeon; Hwang, Eung Soo] Seoul Natl Univ, Dept Microbiol & Immunol, Coll Med, Seoul, South Korea; [Kim, Jiyeon; Hwang, Eung Soo] Seoul Natl Univ, Inst Endem Dis, Med Res Ctr, Seoul, South Korea Kang, M (reprint author), Sungkyunkwan Univ, Biomed Engn Res Ctr, Samsung Med Ctr, Smart Healthcare Res Inst,Sch Med, Seoul, South Korea.; Kang, M (reprint author), Sungkyunkwan Univ, Dept Med Device Management & Res, SAIHST, Seoul, South Korea.; Chung, DR (reprint author), Samsung Med Ctr, Ctr Infect Prevent & Control, Seoul, South Korea.; Chung, DR (reprint author), APFID, Seoul, South Korea.; Chung, DR (reprint author), Sungkyunkwan Univ, Samsung Med Ctr, Dept Internal Med, Div Infect Dis,Sch Med, Seoul, South Korea. minhee.kang@samsung.com; minikang@skku.edu Kang, Minhee/0000-0003-0330-7828 government-wide R&D Fund for the research of infectious diseases in Republic of Korea [HG18C0062]; Bio & Medical Technology Development Program of the National Research Foundation (NRF) - Ministry of Science [2016M3A9B6919187, 2016M3A9B6919189] This research was supported by the government-wide R&D Fund for the research of infectious diseases in Republic of Korea (HG18C0062), and the Bio & Medical Technology Development Program of the National Research Foundation (NRF) funded by the Ministry of Science (2016M3A9B6919187, 2016M3A9B6919189). 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DEC 2019 13 4 341 351 10.1007/s13206-019-3404-3 NOV 2019 11 Biochemical Research Methods; Chemistry, Analytical; Nanoscience & Nanotechnology Biochemistry & Molecular Biology; Chemistry; Science & Technology - Other Topics KJ0DA WOS:000496262000003 Bronze 2020-04-01 J Liu, P; Tan, XZ Liu, Peng; Tan, Xian-zheng 2019 Novel Coronavirus (2019-nCoV) Pneumonia RADIOLOGY English Editorial Material [Liu, Peng; Tan, Xian-zheng] Hunan Normal Univ, Affiliated Hosp 1, Dept Radiol, Hunan Prov Peoples Hosp, Changsha 410005, Peoples R China Tan, XZ (reprint author), Hunan Normal Univ, Affiliated Hosp 1, Dept Radiol, Hunan Prov Peoples Hosp, Changsha 410005, Peoples R China. xianzhengtan@163.com tan, xianzheng/0000-0001-9319-1237 Chung M, RADIOLOGY; Huang C, 2020, LANCET; Kanne J., RADIOLOGY; Lei J, 2020, RADIOLOGY; Zhu N, 2020, N ENGL J MED 5 1 1 44 44 RADIOLOGICAL SOC NORTH AMERICA OAK BROOK 820 JORIE BLVD, OAK BROOK, IL 60523 USA 0033-8419 RADIOLOGY Radiology APR 2020 295 1 19 19 10.1148/radiol.2020200257 1 Radiology, Nuclear Medicine & Medical Imaging Radiology, Nuclear Medicine & Medical Imaging KV1EC WOS:000520166000005 32013795 Bronze 2020-04-01 J Ruan, QR; Yang, K; Wang, WX; Jiang, LY; Song, JX Ruan, Qiurong; Yang, Kun; Wang, Wenxia; Jiang, Lingyu; Song, Jianxin Clinical predictors of mortality due to COVID-19 based on an analysis of data of 150 patients from Wuhan, China INTENSIVE CARE MEDICINE English Letter; Early Access [Ruan, Qiurong] Huazhong Univ Sci & Technol, Inst Pathol, Tongji Hosp, Tongji Med Coll, 1095 Jiefang Ave, Wuhan 430030, Hubei, Peoples R China; [Ruan, Qiurong] Huazhong Univ Sci & Technol, Sch Basic Med, Dept Pathol, Tongji Med Coll, 1095 Jiefang Ave, Wuhan 430030, Hubei, Peoples R China; [Yang, Kun] Huazhong Univ Sci & Technol, Dept Dermatol, Tongji Med Coll, Tongji Hosp, 1095 Jiefang Ave, Wuhan 430030, Hubei, Peoples R China; [Wang, Wenxia; Song, Jianxin] Huazhong Univ Sci & Technol, Tongji Hosp, Dept Infect Dis, Tongji Med Coll, 1095 Jiefang Ave, Wuhan 430030, Hubei, Peoples R China; [Jiang, Lingyu] Huazhong Univ Sci & Technol, Tongji Hosp, Dept Clin Immunol, Tongji Med Coll, 1095 Jiefang Ave, Wuhan 430030, Hubei, Peoples R China Song, JX (reprint author), Huazhong Univ Sci & Technol, Tongji Hosp, Dept Infect Dis, Tongji Med Coll, 1095 Jiefang Ave, Wuhan 430030, Hubei, Peoples R China. songsingsjx@sina.com ; Yang, Kun/J-7229-2013 song, jianxin/0000-0002-4090-6670; Yang, Kun/0000-0001-6729-2552 Emergency Project for the Prevention and Control of the Novel Coronavirus (SARS-CoV-2) Outbreak in Hubei Province, China; National Natural Science Foundation of ChinaNational Natural Science Foundation of China [81703174, 81602722] This work was supported by the Emergency Project for the Prevention and Control of the Novel Coronavirus (SARS-CoV-2) Outbreak in Hubei Province, China, as well as the National Natural Science Foundation of China (81703174 and 81602722). The funding source had no role in the design and conduct of the study, the analysis and interpretation of the data, or in the writing of the manuscript. Chen NS, 2020, LANCET, V395, P507, DOI 10.1016/S0140-6736(20)30211-7; Mahase E, 2020, BMJ-BRIT MED J, V368, DOI 10.1136/bmj.m641; Wang DW, 2019, SCI CHINA LIFE SCI, V62, P187, DOI 10.1007/s11427-018-9385-3 3 1 1 44 44 SPRINGER NEW YORK ONE NEW YORK PLAZA, SUITE 4600, NEW YORK, NY, UNITED STATES 0342-4642 1432-1238 INTENS CARE MED Intensive Care Med. 10.1007/s00134-020-05991-x MAR 2020 3 Critical Care Medicine General & Internal Medicine KS1EV WOS:000518054400003 32125452 Bronze 2020-04-01 J Shang, WL; Yang, Y; Rao, YF; Rao, XC Shang, Weilong; Yang, Yi; Rao, Yifan; Rao, Xiancai The outbreak of SARS-CoV-2 pneumonia calls for viral vaccines NPJ VACCINES English Article SPIKE PROTEIN; SARS-COV; NEUTRALIZATION; IMMUNIZATION The outbreak of 2019-novel coronavirus disease (COVID-19) that is caused by SARS-CoV-2 has spread rapidly in China, and has developed to be a Public Health Emergency of International Concern. However, no specific antiviral treatments or vaccines are available yet. This work aims to share strategies and candidate antigens to develop safe and effective vaccines against SARS-CoV-2. [Shang, Weilong; Yang, Yi; Rao, Yifan; Rao, Xiancai] Third Mil Med Univ, Army Med Univ, Coll Basic Med Sci, Dept Microbiol, Chongqing 400038, Peoples R China Rao, XC (reprint author), Third Mil Med Univ, Army Med Univ, Coll Basic Med Sci, Dept Microbiol, Chongqing 400038, Peoples R China. raoxiancai@126.com National Key Biosafety Technology Research and Development Program of China [2017YFC1200404-4]; Biosafety Research Program of PLA [17SAZ08] This work was supported by the National Key Biosafety Technology Research and Development Program of China (2017YFC1200404-4), and the Biosafety Research Program of PLA (17SAZ08). 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JOURNAL OF MEDICAL VIROLOGY English Article epidemiology; engineering and technology; infection; macromolecular design A novel Coronavirus, 2019-nCoV, has been identified as the causal pathogen of an ongoing epidemic, with the first cases reported in Wuhan, China, last December 2019, and has since spread to other countries worldwide, included Europe and very recently Italy. In this short report, phylogenetic reconstruction was used to better understand the transmission dynamics of the virus from its first introduction in China focusing on the more recent evidence of infection in a couple of Chinese tourists arrived in Italy on 23rd January 2020 and labeled as Coronavirus Italian cases. A maximum clade credibility tree has been built using a dataset of 54 genome sequences of 2019-nCoV plus two closely related bat strains (SARS-like CoV) available in GenBank. Bayesian time-scaled phylogenetic analysis was implemented in BEAST 1.10.4. The Bayesian phylogenetic reconstruction showed that 2019-2020 nCoV firstly introduced in Wuhan on 25 November 2019, started epidemic transmission reaching many countries worldwide, including Europe and Italy where the two strains isolated dated back 19 January 2020, the same that the Chinese tourists arrived in Italy. Strains isolated outside China were intermixed with strains isolated in China as evidence of likely imported cases in Rome, Italy, and Europe, as well. In conclusion, this report suggests that further spread of 2019-nCoV epidemic was supported by human mobility and that quarantine of suspected or diagnosed cases is useful to prevent further transmission. Viral genome phylogenetic analysis represents a useful tool for the evaluation of transmission dynamics and preventive action. [Giovanetti, Marta] Fundacao Oswaldo Cruz, Inst Oswaldo Cruz, Lab Flavivirus, Rio De Janeiro, Brazil; [Benvenuto, Domenico; Ciccozzi, Massimo] Univ Campus Biomed Rome, Unit Med Stat & Mol Epidemiol, Rome, Italy; [Angeletti, Silvia] Univ Campus Biomed Rome, Unit Clin Lab Sci, I-00128 Rome, Italy Angeletti, S (reprint author), Univ Campus Biomed Rome, Unit Clin Lab Sci, I-00128 Rome, Italy. s.angeletti@unicampus.it Ribeiro, Nuno/AAH-2299-2020; ciccozzi, massimo/C-6484-2016 ciccozzi, massimo/0000-0003-3866-9239; Benvenuto, Domenico/0000-0003-3833-2927 [Anonymous], 2020, LANCET, V395, P311, DOI 10.1016/S0140-6736(20)30186-0; Baele G, 2013, MOL BIOL EVOL, V30, P239, DOI 10.1093/molbev/mss243; Benvenuto D, 2020, J MED VIROL, V92, P455, DOI 10.1002/jmv.25688; Darriba D, 2012, NAT METHODS, V9, P772, DOI 10.1038/nmeth.2109; Drummond AJ, 2006, PLOS BIOL, V4, P699, DOI 10.1371/journal.pbio.0040088; Hall T.A., 1999, NUCL ACIDS S SER, V41, P95, DOI DOI 10.1021/BK-1999-0734.CH008; Huang CL, 2020, LANCET, V395, P497, DOI 10.1016/S0140-6736(20)30183-5; Hui DS, 2020, INT J INFECT DIS, V91, P264, DOI 10.1016/j.ijid.2020.01.009; Katoh K, 2019, BRIEF BIOINFORM, V20, P1160, DOI 10.1093/bib/bbx108; Rambaut A, 2018, SYST BIOL, V67, P901, DOI 10.1093/sysbio/syy032; Rambaut A, 2016, VIRUS EVOL, V2, DOI 10.1093/ve/vew007; Suchard MA, 2018, VIRUS EVOL, V4, DOI 10.1093/ve/vey016; Zhu N, 2020, NEW ENGL J MED, V382, P727, DOI 10.1056/NEJMoa2001017 13 0 0 43 43 WILEY HOBOKEN 111 RIVER ST, HOBOKEN 07030-5774, NJ USA 0146-6615 1096-9071 J MED VIROL J. Med. Virol. MAY 2020 92 5 518 521 10.1002/jmv.25699 FEB 2020 4 Virology Virology KU3AY WOS:000512724700001 32022275 Bronze 2020-04-01 J More, GD; Dunowska, M; Acke, E; Cave, NJ More, G. D.; Dunowska, M.; Acke, E.; Cave, N. J. A serological survey of canine respiratory coronavirus in New Zealand NEW ZEALAND VETERINARY JOURNAL English Article Canine respiratory coronavirus; ELISA; seroprevalence; New Zealand; survey GROUP-2 CORONAVIRUS; INFLUENZA-VIRUS; PREVALENCE; DOGS; DISEASE Aims: To determine the seroprevalence of canine respiratory coronavirus (CRCoV) in New Zealand dogs, and to explore associations with age, sex, breed, month, and geographical region of sampling and reported presence of clinical signs suggestive of respiratory disease. Methods: A total of 1,015 canine serum samples were randomly selected from submissions to a diagnostic laboratory between March and December 2014, and were analysed for CRCoV antibodies using a competitive ELISA. Logistic regression analysis was used to determine associations between seroprevalence of CRCoV and breed category, age, sex, sampling month, region, and reported health status of dogs. Results: Overall, 538/1,015 (53.0%) samples were seropositive for CRCoV, with 492/921 (53.4%) positive dogs in the North Island and 46/94 (49%) in the South Island. Age of dog, sampling month, region, and presence of abnormal respiratory signs were included in the initial logistic regression model. Seroprevalence was higher in dogs aged >= 3 compared with <= 2 years (p<0.01). The lowest seroprevalence was observed in July (30/105; 28.5%) and August (32/100; 32%), and the highest in June (74/100; 74%). Seroprevalence in dogs from Auckland was higher than in dogs from the Hawkes Bay, Manawatu, Marlborough, and Waikato regions (p<0.05). Abnormal respiratory signs (coughing, nasal discharge, or sneezing) were reported for 28/1,015 (2.8%) dogs sampled. Seroprevalence for CRCoV tended to be higher among dogs with respiratory signs (67.9 (95% CI=47.6-83.4)%) than dogs with no reported respiratory signs (52.6 (95% CI=49.5-55.7)%). Conclusions: Serological evidence of infection with CRCoV was present in more than half of the dogs tested from throughout New Zealand. Differences in CRCoV seroprevalence between regions and lack of seasonal pattern indicate that factors other than external temperatures may be important in the epidemiology of CRCoV in New Zealand. [More, G. D.; Dunowska, M.; Acke, E.; Cave, N. J.] Massey Univ, Sch Vet Sci, Palmerston North, New Zealand; [Acke, E.] Vet Med Lab GmbH, IDEXX Labs, Ludwigsburg, Germany Dunowska, M (reprint author), Massey Univ, Sch Vet Sci, Palmerston North, New Zealand. m.dunowska@massey.ac.nz New Zealand Greyhound Racing Association Sincere thanks to Raewynne Pearson and Adrienne French for supplying the serum samples for ELISA and to Janis Bridges for help with statistical analysis. This study was partly funded by the New Zealand Greyhound Racing Association. 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JAN 2 2020 68 1 54 59 10.1080/00480169.2019.1667282 6 Veterinary Sciences Veterinary Sciences JS8RS WOS:000500569700001 31513753 Bronze 2020-04-01 J Zhan, SY; Yang, YY; Fu, CX Zhan, Siyi; Yang, Ying Ying; Fu, Chuanxi Public's early response to the novel coronavirus-infected pneumonia EMERGING MICROBES & INFECTIONS English Letter [Zhan, Siyi; Yang, Ying Ying; Fu, Chuanxi] Zhejiang Chinese Med Univ, Sch Publ Hlth, 548 Binwen Rd, Hangzhou 310053, Peoples R China Fu, CX (reprint author), Zhejiang Chinese Med Univ, Sch Publ Hlth, 548 Binwen Rd, Hangzhou 310053, Peoples R China. fuchuanxi@gmail.com Li Qun, 2020, N Engl J Med, V382, P1199, DOI 10.1056/NEJMoa2001316; MacIntyre CR, 2017, INFLUENZA OTHER RESP, V11, P511, DOI 10.1111/irv.12474; National Health Committee of the People's Republic of China, UPD PNEUM 2019 NCOV; Wong TW, 2005, AM J INFECT CONTROL, V33, P580, DOI 10.1016/j.ajic.2005.05.025; World Health Organization, 14 WHO 5 0 0 43 43 TAYLOR & FRANCIS LTD ABINGDON 2-4 PARK SQUARE, MILTON PARK, ABINGDON OR14 4RN, OXON, ENGLAND 2222-1751 EMERG MICROBES INFEC Emerg. Microbes Infect. JAN 1 2020 9 1 534 534 10.1080/22221751.2020.1732232 1 Immunology; Microbiology Immunology; Microbiology KS9ZO WOS:000518670100001 32122250 DOAJ Gold, Green Accepted 2020-04-01 J Chiolero, A Chiolero, Arnaud CORONAVIRUS COVERAGE Covid-19: a digital epidemic BMJ-BRITISH MEDICAL JOURNAL English Letter [Chiolero, Arnaud] Univ Fribourg, PopHealthLab, Populat Hlth Lab, CH-1700 Fribourg, Switzerland Chiolero, A (reprint author), Univ Fribourg, PopHealthLab, Populat Hlth Lab, CH-1700 Fribourg, Switzerland. achiolero@gmail.com Candeais V, 2018, HUMAN COSTS EPIDEMIC; Gigerenzer G, 2015, RISK SAVVY MAKE GOOD; MOWBRAY H, 2020, BMJ-BRIT MED J, V368, DOI DOI 10.1136/BMJ.M516 3 0 0 42 42 BMJ PUBLISHING GROUP LONDON BRITISH MED ASSOC HOUSE, TAVISTOCK SQUARE, LONDON WC1H 9JR, ENGLAND 1756-1833 BMJ-BRIT MED J BMJ-British Medical Journal MAR 2 2020 368 m764 10.1136/bmj.m764 1 Medicine, General & Internal General & Internal Medicine KU2KC WOS:000519536400004 32122876 Bronze 2020-04-01 J Gao, PC; Zhang, H; Wu, ZW; Wang, JC Gao, Peichao; Zhang, Hong; Wu, Zhiwei; Wang, Jicheng Visualising the expansion and spread of coronavirus disease 2019 by cartograms ENVIRONMENT AND PLANNING A-ECONOMY AND SPACE English Article; Early Access Cartogram; visualisation; graphic Coronavirus disease 2019 (COVID-19) has emerged as a growing focus of global attention and a critical factor in public-health decision making. Towards fighting the COVID-19 outbreak, countries worldwide and international organisations have taken various actions, including promoting the transparency of and public access to disease data. In such public communications, maps have played an important role in that a map is worth a thousand words. Most of these have taken the form of a choropleth map. Here, we propose employing cartograms to visualise both the expansion and spread of COVID-19. We designed a combination of six circular cartograms containing the data of confirmed cases every 48 hours from 24 January to 3 February 2020. Such a design conveys both spatial and temporal information more intuitively and efficiently, so it can be expected to facilitate better public participation in the fight against COVID-19. [Gao, Peichao] Beijing Normal Univ, State Key Lab Earth Surface Proc & Resource Ecol, Beijing, Peoples R China; [Gao, Peichao] Beijing Normal Univ, Fac Geog Sci, Beijing, Peoples R China; [Zhang, Hong; Wu, Zhiwei; Wang, Jicheng] Southwest Jiaotong Univ, Fac Geosci & Environm Engn, Chengdu 611756, Sichuan, Peoples R China; [Wang, Jicheng] Hong Kong Polytech Univ, Geoinformat, Hong Kong, Peoples R China; [Wang, Jicheng] Dept Land Surveying, Chengdu, Sichuan, Peoples R China Zhang, H (reprint author), Southwest Jiaotong Univ, Fac Geosci & Environm Engn, Chengdu 611756, Sichuan, Peoples R China. zhangh2011@swjtu.edu.cn Fundamental Research Funds for the Central UniversitiesFundamental Research Funds for the Central Universities [2019NTST02] The author(s) disclosed receipt of the following financial support for the research, authorship and/or publication of this article: This research was supported by the Fundamental Research Funds for the Central Universities (Grant No. 2019NTST02). 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A 0308518X20910162 10.1177/0308518X20910162 FEB 2020 4 Environmental Studies; Geography Environmental Sciences & Ecology; Geography KQ4LZ WOS:000516897400001 Bronze 2020-04-01 J Chen, WL; Lan, Y; Yuan, XZ; Deng, XL; Li, YP; Cai, XL; Li, LY; He, RY; Tan, YZ; Deng, XZ; Gao, M; Tang, GF; Zhao, LZ; Wang, JL; Fan, QH; Wen, CY; Tong, YW; Tang, YB; Hu, FY; Li, F; Tang, XP Chen, Weilie; Lan, Yun; Yuan, Xiaozhen; Deng, Xilong; Li, Yueping; Cai, Xiaoli; Li, Liya; He, Ruiying; Tan, Yizhou; Deng, Xizi; Gao, Ming; Tang, Guofang; Zhao, Lingzhai; Wang, Jinlin; Fan, Qinghong; Wen, Chunyan; Tong, Yuwei; Tang, Yangbo; Hu, Fengyu; Li, Feng; Tang, Xiaoping Detectable 2019-nCoV viral RNA in blood is a strong indicator for the further clinical severity EMERGING MICROBES & INFECTIONS English Article 2019-ncov; laboratory test; blood viral RNA; pharyngeal swab; anal swab CORONAVIRUS; PNEUMONIA; WUHAN The novel coronavirus (2019-nCoV) infection caused pneumonia. we retrospectively analyzed the virus presence in the pharyngeal swab, blood, and the anal swab detected by real-time PCR in the clinical lab. Unexpectedly, the 2109-nCoV RNA was readily detected in the blood (6 of 57 patients) and the anal swabs (11 of 28 patients). Importantly, all of the 6 patients with detectable viral RNA in the blood cohort progressed to severe symptom stage, indicating a strong correlation of serum viral RNA with the disease severity (p-value = 0.0001). Meanwhile, 8 of the 11 patients with annal swab virus-positive was in severe clinical stage. However, the concentration of viral RNA in the anal swab (Ct value = 24 + 39) was higher than in the blood (Ct value = 34 + 39) from patient 2, suggesting that the virus might replicate in the digestive tract. Altogether, our results confirmed the presence of virus RNA in extra-pulmonary sites. [Chen, Weilie; Lan, Yun; Yuan, Xiaozhen; Deng, Xilong; Li, Yueping; Cai, Xiaoli; Li, Liya; He, Ruiying; Tan, Yizhou; Deng, Xizi; Gao, Ming; Tang, Guofang; Zhao, Lingzhai; Wang, Jinlin; Fan, Qinghong; Wen, Chunyan; Tong, Yuwei; Tang, Yangbo; Hu, Fengyu; Li, Feng; Tang, Xiaoping] Guangzhou Med Univ, Guangzhou Peoples Hosp 8, 627 Dongfeng Dong Rd, Guangzhou 510060, Guangdong, Peoples R China Hu, FY; Li, F; Tang, XP (reprint author), Guangzhou Med Univ, Guangzhou Peoples Hosp 8, 627 Dongfeng Dong Rd, Guangzhou 510060, Guangdong, Peoples R China. gz8h_lifeng@126.com; gz8hhfy@126.com; tangxiaopinggz@163.com National Natural Science Foundation of ChinaNational Natural Science Foundation of China [81670536, 81770593]; National Science and Technology Major Project [2017ZX10202203-004-002] We declare no competing interest. We thank all the physicians and nurses who cared these patients. This work was supported by National Natural Science Foundation of China Grant (No. 81670536 and 81770593) and by the National Science and Technology Major Project (2017ZX10202203-004-002). 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JAN 1 2020 9 1 469 473 10.1080/22221751.2020.1732837 5 Immunology; Microbiology Immunology; Microbiology KR3MS WOS:000517523100001 32102625 DOAJ Gold, Green Published 2020-04-01 J Jo, S; Kim, S; Shin, DH; Kim, MS Jo, Seri; Kim, Suwon; Shin, Dong Hae; Kim, Mi-Sun Inhibition of SARS-CoV 3CL protease by flavonoids JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY English Article SARS-CoV; SARS-CoV 3CLpro; flavonoid; FRET; inhibitory compounds RESPIRATORY-SYNDROME; 3C-LIKE PROTEASE; CORONAVIRUS; DERIVATIVES; INSIGHTS; DRUGS There were severe panics caused by Severe Acute Respiratory Syndrome (SARS) and Middle-East Respiratory Syndrome-Coronavirus. Therefore, researches targeting these viruses have been required. Coronaviruses (CoVs) have been rising targets of some flavonoids. The antiviral activity of some flavonoids against CoVs is presumed directly caused by inhibiting 3C-like protease (3CLpro). Here, we applied a flavonoid library to systematically probe inhibitory compounds against SARS-CoV 3CLpro. Herbacetin, rhoifolin and pectolinarin were found to efficiently block the enzymatic activity of SARS-CoV 3CLpro. The interaction of the three flavonoids was confirmed using a tryptophan-based fluorescence method, too. An induced-fit docking analysis indicated that S1, S2 and S3 ' sites are involved in binding with flavonoids. The comparison with previous studies showed that Triton X-100 played a critical role in objecting false positive or overestimated inhibitory activity of flavonoids. With the systematic analysis, the three flavonoids are suggested to be templates to design functionally improved inhibitors. Ewha W Univ, Coll Pharm, Seoul, South Korea; Ewha W Univ, Grad Sch Pharmaceut Sci, Seoul, South Korea Shin, DH; Kim, MS (reprint author), Ewha W Univ, Dept Pharm, Seoul 03760, South Korea. dhshin55@ewha.ac.kr; shfwk31@ewha.ac.kr National Research Foundation of Korea - Ministry of Education, Science and Technology, Republic of Korea (MEST) [2018R1D1A1B07050781, 2018R1 D1A1B07050942]; Brain Korea 21 (BK21) ProjectMinistry of Education & Human Resources Development (MOEHRD), Republic of Korea This work was supported by the Basic Science Research Programmes, 2018R1D1A1B07050781 to DHS and 2018R1 D1A1B07050942 to MK, funded by the National Research Foundation of Korea grant granted by the Ministry of Education, Science and Technology, Republic of Korea (MEST). S. Jo was supported by Brain Korea 21 (BK21) Project. 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Subsequently, SARS-related CoVs (SARSr-CoVs) were found in palm civets from live animal markets in Guangdong and in various horseshoe bat species, which were believed to be the ultimate reservoir of SARSr-CoV. Till November 2018, 339 SARSr-CoV genomes have been sequenced, including 274 from human, 18 from civets and 47 from bats [mostly from Chinese horseshoe bats (Rhinolophus sinicus), n = 30; and greater horseshoe bats (Rhinolophus ferrumequinum), n = 9]. The human SARS-CoVs and civet SARSr-CoVs were collected in 2003/2004, while bat SARSr-CoVs were continuously isolated in the past 13 years even after the cessation of the SARS epidemic. SARSr-CoVs belong to the subgenus Sarbecovirus (previously lineage B) of genus Betacoronavirus and occupy a unique phylogenetic position. Overall, it is observed that the SARSr-CoV genomes from bats in Yunnan province of China possess the highest nucleotide identity to those from civets. It is evident from both multiple alignment and phylogenetic analyses that some genes of a particular SARSr-CoV from bats may possess higher while other genes possess much lower nucleotide identity to the corresponding genes of SARSr-CoV from human/civets, resulting in the shift of phylogenetic position in different phylogenetic trees. Our current model on the origin of SARS is that the human SARS-CoV that caused the epidemic in 2002/2003 was probably a result of multiple recombination events from a number of SARSr-CoV ancestors in different horseshoe bat species. [Luk, Hayes K. H.; Li, Xin; Fung, Joshua; Lau, Susanna K. P.; Woo, Patrick C. Y.] Univ Hong Kong, Dept Microbiol, Hong Kong, Peoples R China; [Lau, Susanna K. P.; Woo, Patrick C. Y.] Univ Hong Kong, State Key Lab Emerging Infect Dis, Hong Kong, Peoples R China; [Lau, Susanna K. P.; Woo, Patrick C. Y.] Univ Hong Kong, Carol Yu Ctr Infect, Hong Kong, Peoples R China; [Lau, Susanna K. P.; Woo, Patrick C. Y.] Zhejiang Univ, Collaborat Innovat Ctr Diag & Treatment Infect Di, Hangzhou 310006, Zhejiang, Peoples R China Lau, SKP; Woo, PCY (reprint author), Univ Hong Kong, Queen Mary Hosp, State Key Lab Emerging Infect Dis, Dept Microbiol, Block T, Hong Kong, Peoples R China. skplau@hku.hk; pcywoo@hku.hk Woo, Patrick Chiu Yat/AAJ-6112-2020 Woo, Patrick Chiu Yat/0000-0001-9401-1832; Luk, Hayes Kam Hei/0000-0002-9831-2912 Theme-based Research Scheme, University Grant Committee [T11/707/15]; Consultancy Service for Enhancing Laboratory Surveillance of Emerging Infectious Diseases and Research Capability on Antimicrobial Resistance for Department of Health, HKSAR Government; University Development Fund, The University of Hong KongUniversity of Hong Kong This work is partly supported by the Theme-based Research Scheme (Project No. T11/707/15), University Grant Committee; Consultancy Service for Enhancing Laboratory Surveillance of Emerging Infectious Diseases and Research Capability on Antimicrobial Resistance for Department of Health, HKSAR Government; and University Development Fund, The University of Hong Kong. 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Genet. Evol. JUL 2019 71 21 30 10.1016/j.meegid.2019.03.001 10 Infectious Diseases Infectious Diseases HU7JT WOS:000465457800004 30844511 Bronze 2020-04-01 J Morse, JS; Lalonde, T; Xu, SQ; Liu, WR Morse, Jared S.; Lalonde, Tyler; Xu, Shiqing; Liu, Wenshe Ray Learning from the Past: Possible Urgent Prevention and Treatment Options for Severe Acute Respiratory Infections Caused by 2019-nCoV CHEMBIOCHEM English Article antiviral agents; coronavirus; 2019-nCoV; SARS; spike proteins; RdRp; 3CLpro PAPAIN-LIKE PROTEASE; RECEPTOR-BINDING DOMAIN; SARS-CORONAVIRUS; AURINTRICARBOXYLIC ACID; SPIKE PROTEIN; COV; VACCINE; POTENT; IDENTIFICATION; RIBAVIRIN With the current trajectory of the 2019-nCoV outbreak unknown, public health and medicinal measures will both be needed to contain spreading of the virus and to optimize patient outcomes. Although little is known about the virus, an examination of the genome sequence shows strong homology with its better-studied cousin, SARS-CoV. The spike protein used for host cell infection shows key nonsynonymous mutations that might hamper the efficacy of previously developed therapeutics but remains a viable target for the development of biologics and macrocyclic peptides. Other key drug targets, including RNA-dependent RNA polymerase and coronavirus main proteinase (3CLpro), share a strikingly high (>95 %) homology to SARS-CoV. Herein, we suggest four potential drug candidates (an ACE2-based peptide, remdesivir, 3CLpro-1 and a novel vinylsulfone protease inhibitor) that could be used to treat patients suffering with the 2019-nCoV. We also summarize previous efforts into drugging these targets and hope to help in the development of broad-spectrum anti-coronaviral agents for future epidemics. [Morse, Jared S.; Lalonde, Tyler; Xu, Shiqing; Liu, Wenshe Ray] Texas A&M Univ, Dept Chem, Texas A&M Drug Discovery Lab, College Stn, TX 77843 USA Xu, SQ; Liu, WR (reprint author), Texas A&M Univ, Dept Chem, Texas A&M Drug Discovery Lab, College Stn, TX 77843 USA. shiqing.xu@tamu.edu; wliu@chem.tamu.edu Liu, wenshe/O-4425-2014 Liu, wenshe/0000-0002-7078-6534 National Institutes of HealthUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USA [R01GM121584, R01GM127575]; Cancer Prevention & Research Institute of Texas [RP170797]; Welch FoundationThe Welch Foundation [A1715] Research support in the Texas A&M Drug Discovery Center is provided by the National Institutes of Health (grants R01GM121584 and R01GM127575), the Cancer Prevention & Research Institute of Texas (grant RP170797), and the Welch Foundation (grant A1715). We thank Sunshine Zea Leeuwon for providing assistance in designing all the figures. 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Filleul, L; Vandentorren, S; Spaccaferri, G; Prouvost, H; Albert, M; Barbet, M; Brisebarre, A; Donati, F; van der Werf, S; Ardoin, A; Dreyer, M; Tararbit, K; Amodeo, M; Couaillier, E; Fabre, P; Ha Bold, D; Che, D; Bendjelloul, G; Lallemant, MB; Charachon, V; Deconinck, L; Descamps, D; Gerard, S; Houhou, N; Le Hingrat, Q; Lolom, I; Lucet, JC; Pourbaix, A; Valayer, S; Yazdanpana, Y; Boyer, A; Clouzeau, B; Combes, X; Desclaux, A; Dindart, JM; Duvignaud, A; Garrigue, I; Gruson, D; Lafon, ME; Perreau, P; Pistone, T; Poteau, M; Tentillier, E; Mathieu, P Stoecklin, Sibylle Bernard; Rolland, Patrick; Silue, Yassoungo; Mailles, Alexandra; Campese, Christine; Simondon, Anne; Mechain, Matthieu; Meurice, Laure; Nguyen, Mathieu; Bassi, Clement; Yamani, Estelle; Behillil, Sylvie; Ismael, Sophie; Nguyen, Duc; Malvy, Denis; Lescure, Francois Xavier; Georges, Scarlett; Lazarus, Clement; Tabai, Anouk; Stempfelet, Morgane; Enouf, Vincent; Coignard, Bruno; Levy-Bruhl, Daniel; Filleul, Laurent; Vandentorren, Stephanie; Spaccaferri, Guillaume; Prouvost, Helene; Albert, Melanie; Barbet, Marion; Brisebarre, Angela; Donati, Flora; van der Werf, Sylvie; Ardoin, Alexis; Dreyer, Marion; Tararbit, Karim; Amodeo, Matthieu; Couaillier, Elodie; Fabre, Pascal; Ha Bold, Daniel; Che, Didier; Bendjelloul, Gisele; Lallemant, Marine Billaudelle; Charachon, Valentine; Deconinck, Laurene; Descamps, Diane; Gerard, Sandrine; Houhou, Nadirha; Le Hingrat, Quentin; Lolom, Isabelle; Lucet, Jean-Christophe; Pourbaix, Annabelle; Valayer, Simon; Yazdanpana, Yazdan; Boyer, Alexandre; Clouzeau, Benjamin; Combes, Xavier; Desclaux, Arnaud; Dindart, Jean-Michel; Duvignaud, Alexandre; Garrigue, Isabelle; Gruson, Didier; Lafon, Marie-Edith; Perreau, Pauline; Pistone, Thierry; Poteau, Maxime; Tentillier, Eric; Mathieu, Pauline Invest Team First cases of coronavirus disease 2019 (COVID-19) in France: surveillance, investigations and control measures, January 2020 EUROSURVEILLANCE English Article A novel coronavirus (severe acute respiratory syndrome coronavirus 2, SARS-CoV-2) causing a cluster of respiratory infections (coronavirus disease 2019, COVID-19) in Wuhan, China, was identified on 7 January 2020. The epidemic quickly disseminated from Wuhan and as at 12 February 2020, 45,179 cases have been confirmed in 25 countries, including 1,116 deaths. Strengthened surveillance was implemented in France on 10 January 2020 in order to identify imported cases early and prevent secondary transmission. Three categories of risk exposure and follow-up procedure were defined for contacts. Three cases of COVID-19 were confirmed on 24 January, the first cases in Europe. Contact tracing was immediately initiated. Five contacts were evaluated as at low risk of exposure and 18 at moderate/high risk. As at 12 February 2020, two cases have been discharged and the third one remains symptomatic with a persistent cough, and no secondary transmission has been identified. Effective collaboration between all parties involved in the surveillance and response to emerging threats is required to detect imported cases early and to implement adequate control measures. [Stoecklin, Sibylle Bernard; Mailles, Alexandra; Campese, Christine; Georges, Scarlett; Coignard, Bruno; Levy-Bruhl, Daniel; Che, Didier] Sante Publ France, Direct Malad Infect, St Maurice, France; [Rolland, Patrick] Sante Publ France, Direct Reg, St Maurice, France; [Silue, Yassoungo; Bassi, Clement] Sante Publ France, Direct Reg, Cellule Reg Ile France, Paris, France; [Simondon, Anne; Yamani, Estelle; van der Werf, Sylvie; Ardoin, Alexis; Dreyer, Marion; Tararbit, Karim] Agence Reg Sante Ile France, Paris, France; [Mechain, Matthieu; Nguyen, Mathieu; Amodeo, Matthieu; Couaillier, Elodie; Fabre, Pascal; Ha Bold, Daniel] Agence Reg Sante Nouvelle Aquitaine, Bordeaux, France; [Meurice, Laure; Filleul, Laurent; Vandentorren, Stephanie] Sante Publ France, Direct Reg, Cellule Reg Nouvelle Aquitaine, Bordeaux, France; [Behillil, Sylvie; Enouf, Vincent; Albert, Melanie; Barbet, Marion; Brisebarre, Angela; Donati, Flora; van der Werf, Sylvie] Inst Pasteur, Ctr Natl Reference Virus Infect Resp, Dont Grippe, Paris, France; [Ismael, Sophie; Lescure, Francois Xavier; Bendjelloul, Gisele; Lallemant, Marine Billaudelle; Charachon, Valentine; Deconinck, Laurene; Descamps, Diane; Gerard, Sandrine; Houhou, Nadirha; Le Hingrat, Quentin; Lolom, Isabelle; Lucet, Jean-Christophe; Pourbaix, Annabelle; Valayer, Simon; Yazdanpana, Yazdan] Hop Bichat Claude Bernard, AP HP, Serv Malad Infect & Trop, Paris, France; [Nguyen, Duc; Malvy, Denis] CHU Bordeaux, Serv Malad Infect & Trop, Bordeaux GeoSentinel Site, Bordeaux, France; [Malvy, Denis] Univ Bordeaux, UMR 1219, Bordeaux, France; [Lescure, Francois Xavier] Univ Paris, INSERM, IAME, Paris, France; [Lazarus, Clement; Mathieu, Pauline] Minist Solidarites & Sante, Direct Gen Sante, Ctr Operationnel Recept & Regulat Urgences Sanit, Paris, France; [Tabai, Anouk; Stempfelet, Morgane] Sante Publ France, Direct Alerte & Crise, St Maurice, France; [Spaccaferri, Guillaume] Sante Publ France, Direct Reg, Cellule Reg Auvergne Rhone Alpes, Lyon, France; [Prouvost, Helene] Sante Publ France, Direct Reg, Cellule Reg Hauts France, Lille, France; [Boyer, Alexandre; Clouzeau, Benjamin; Combes, Xavier; Desclaux, Arnaud; Dindart, Jean-Michel; Duvignaud, Alexandre; Garrigue, Isabelle; Gruson, Didier; Lafon, Marie-Edith; Perreau, Pauline; Pistone, Thierry; Poteau, Maxime; Tentillier, Eric] CHU Bordeaux, Bordeaux GeoSentinel Site, Bordeaux, France Stoecklin, SB (reprint author), Sante Publ France, Direct Malad Infect, St Maurice, France. sibylle.bernard-stoecklin@santepubUquefrance.fr Ribeiro, Nuno/AAH-2299-2020 ARDOIN, Alexis/0000-0001-9506-5672 Chan JFW, 2020, LANCET, V395, P514, DOI 10.1016/S0140-6736(20)30154-9; Corman VM, 2020, EUROSURVEILLANCE, V25, P23, DOI 10.2807/1560-7917.ES.2020.25.3.2000045; ECDC, 2020, NOV COR; European Centre for Disease Prevention and Control (ECDC), 2020, OUTBR AC RESP SYNDR; European Centre for Disease Prevention and Control (ECDC), 2020, RISK ASS GUID INF DI; European Centre for Disease Prevention and Control (ECDC), 2020, PUBL HLTH MAN PERS H; Haut Conseil de la sante publique (HCSP), 2015, DEF CLASS CAS POSS C; Imai N., 2020, 3 IMP COLL LOND; Li Qun, 2020, N Engl J Med, V382, P1199, DOI 10.1056/NEJMoa2001316; Liu T, 2020, TRANSMISSION DYNAMIC, V2020, P2025; Riou J, PATTERN EARLY HUMAN; World Health Organization (WHO), 2020, 1 FEW X FFX CAS CONT; World Health Organization (WHO), GO DAT MAN COMPL DAT; World Health Organization ( WHO), 2020, NOV COR CHIN DIS OUT; Wu JT, 2020, LANCET 15 1 1 38 38 EUR CENTRE DIS PREVENTION & CONTROL STOCKHOLM TOMTEBODAVAGEN 11A, STOCKHOLM, 171 83, SWEDEN 1560-7917 EUROSURVEILLANCE Eurosurveillance FEB 13 2020 25 6 20 26 2000094 10.2807/1560-7917.ES.2020.25.6.2000094 7 Infectious Diseases Infectious Diseases KM9CR WOS:000514439600004 32070465 DOAJ Gold, Green Published 2020-04-01 J Yoo, JH Yoo, Jin-Hong The Fight against the 2019-nCoV Outbreak: an Arduous March Has Just Begun JOURNAL OF KOREAN MEDICAL SCIENCE English Editorial Material [Yoo, Jin-Hong] Catholic Univ Korea, Coll Med, Dept Internal Med, Div Infect Dis, 327 Sosa Ro, Seoul 14647, South Korea; [Yoo, Jin-Hong] Bucheon St Marys Hosp, Div Infect Dis, Dept Internal Med, Bucheon, South Korea Yoo, JH (reprint author), Catholic Univ Korea, Coll Med, Dept Internal Med, Div Infect Dis, 327 Sosa Ro, Seoul 14647, South Korea. jhyoo@catholic.ac.kr Yoo, Jin-Hong/0000-0003-2611-3399 [Anonymous], 2020, BNO NEWS; Chan JF-W, 2020, LANCET; Cui J, 2019, NAT REV MICROBIOL, V17, P181, DOI 10.1038/s41579-018-0118-9; Huang C, 2020, LANCET; Kang CK, 2017, J KOREAN MED SCI, V32, P744, DOI 10.3346/jkms.2017.32.5.744; Menachery VD, 2015, NAT MED, V21, P1508, DOI 10.1038/nm.3985; Munster V.J, 2020, N ENGL J MED; World Health Organization, 2020, WHO ISS BEST PRACT N; World Health Organization, 2020, SURV CAS DEF HUM INF; Zhu N, 2019, N ENGL J MED 10 5 5 38 38 KOREAN ACAD MEDICAL SCIENCES SEOUL 302 75 DONG DU ICHON, DONG YONGSAN KU, SEOUL 140 031, SOUTH KOREA 1011-8934 1598-6357 J KOREAN MED SCI J. Korean Med. Sci. FEB 3 2020 35 4 e56 10.3346/jkms.2020.35.e56 3 Medicine, General & Internal General & Internal Medicine KJ4QY WOS:000512044700008 31997618 DOAJ Gold, Green Published 2020-04-01 J Weinhart, M; Hocke, A; Hippenstiel, S; Kurreck, J; Hedtrich, S Weinhart, Marie; Hocke, Andreas; Hippenstiel, Stefan; Kurreck, Jens; Hedtrich, Sarah 3D organ models-Revolution in pharmacological research? PHARMACOLOGICAL RESEARCH English Review Organ model; Pharmacological testing in vitro; 3D printing; Excised human tissue; Alternatives to animal testing; Tissue engineering RESPIRATORY SYNDROME CORONAVIRUS; MESENCHYMAL STEM-CELLS; IN-VITRO; ATOPIC-DERMATITIS; LIVER SLICES; SKIN; LUNG; DIFFERENTIATION; INFLAMMATION; REPLICATION 3D organ models have gained increasing attention as novel preclinical test systems and alternatives to animal testing. Over the years, many excellent in vitro tissue models have been developed. In parallel, microfluidic organ-on-a-chip tissue cultures have gained increasing interest for their ability to house several organ models on a single device and interlink these within a human-like environment. In contrast to these advancements, the development of human disease models is still in its infancy. Although major advances have recently been made, efforts still need to be intensified. Human disease models have proven valuable for their ability to closely mimic disease patterns in vitro, permitting the study of pathophysiological features and new treatment options. Although animal studies remain the gold standard for preclinical testing, they have major drawbacks such as high cost and ongoing controversy over their predictive value for several human conditions. Moreover, there is growing political and social pressure to develop alternatives to animal models, clearly promoting the search for valid, cost-efficient and easy-to-handle systems lacking interspecies-related differences. In this review, we discuss the current state of the art regarding 3D organ as well as the opportunities, limitations and future implications of their use. [Weinhart, Marie] Free Univ Berlin, Inst Chem & Biochem, Berlin, Germany; [Hocke, Andreas; Hippenstiel, Stefan] Charite Univ Med Berlin, Dept Infect & Resp Dis, Berlin, Germany; [Hocke, Andreas; Hippenstiel, Stefan] Free Univ Berlin, Berlin, Germany; [Hocke, Andreas; Hippenstiel, Stefan] Humboldt Univ, Berlin, Germany; [Hocke, Andreas; Hippenstiel, Stefan] Berlin Inst Hlth, Berlin, Germany; [Kurreck, Jens] Tech Univ Berlin, Inst Biotechnol, Berlin, Germany; [Hedtrich, Sarah] Free Univ Berlin, Inst Pharm Pharmacol & Toxicol, Konigin Luise Str 2-4, D-14195 Berlin, Germany Hedtrich, S (reprint author), Free Univ Berlin, Inst Pharm Pharmacol & Toxicol, Konigin Luise Str 2-4, D-14195 Berlin, Germany. sarah.hedtrich@fu-berlin.de Kurreck, Jens/B-7785-2008; Weinhart, Marie/D-1696-2018 Kurreck, Jens/0000-0002-1469-0052; Hedtrich (nee Kuchler), Sarah/0000-0001-6770-3657 Berlin-Brandenburg research platform BB3R; "Bundesinstitut fur Risikobewertung" (BfR) [1328-566]; German Research FoundationGerman Research Foundation (DFG) [DFG SFB-TR84]; German Federal Ministry of Education and Research (BMBF, RAPID-Network); German Federal Ministry of Education and ResearchFederal Ministry of Education & Research (BMBF) [FKZ13N13523]; "Stiftung zur Forderung der Erforschung von Ersatz-und Erganzungsmethoden zur Einschrankung von Tierversuchen" (Stiftung SET); Bundesinstitut fur Risikobewertung [1328-568] Financial support by the Berlin-Brandenburg research platform BB3R and the "Bundesinstitut fur Risikobewertung" (BfR; 1328-566) is gratefully acknowledged by S.He. This work was also supported by the German Research Foundation (DFG SFB-TR84) to A.C.H. and S.Hi. (B6 and TF1) and A.C.H (Z1a) and the German Federal Ministry of Education and Research (BMBF, RAPID-Network to A.C.H. and S.Hi and FKZ13N13523 to M.W.). Further financial support to J.K. from the "Stiftung zur Forderung der Erforschung von Ersatz-und Erganzungsmethoden zur Einschrankung von Tierversuchen" (Stiftung SET) and the "Bundesinstitut fur Risikobewertung" (1328-568) is gratefully acknowledged. Moreover, we thank Dr. Andrea Marzoll and Dr. Roland Frotschl from the Federal Institute for Drugs and Medical Devices in Germany for their valuable help and insights in decision processes of regulatory authorities. Dr. Guy Yealland's help in language editing is gratefully acknowledged and we are thankful to Johanna Berg, Thomas Hiller and Anna Lowa for providing images of 3D printed models and figure design. 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Res. JAN 2019 139 446 451 10.1016/j.phrs.2018.11.002 6 Pharmacology & Pharmacy Pharmacology & Pharmacy HL4QU WOS:000458709000042 30395949 2020-04-01 J Sheikh, A; Al-Taher, A; Al-Nazawi, M; Al-Mubarak, AI; Kandeel, M Sheikh, Abdullah; Al-Taher, Abdulla; Al-Nazawi, Mohammed; Al-Mubarak, Abdullah, I; Kandeel, Mahmoud Analysis of preferred codon usage in the coronavirus N genes and their implications for genome evolution and vaccine design JOURNAL OF VIROLOGICAL METHODS English Article Coronavirus; Nucleocapsid protein; Preferred nucleotides; Amino acid; Codon bias SARS-ASSOCIATED CORONAVIRUS; NUCLEOCAPSID PROTEIN; MONOCLONAL-ANTIBODY; BACTERIAL GENES; SPIKE PROTEIN; PATTERNS; VIRUS; BIAS; PRESSURE; PURIFICATION The nucleocapsid (N) protein of a coronavirus plays a crucial role in virus assembly and in its RNA transcription. It is important to characterize a virus at the nucleotide level to discover the virus's genomic sequence variations and similarities relative to other viruses that could have an impact on the functions of its genes and proteins. This entails a comprehensive and comparative analysis of the viral genomes of interest for preferred nucleotides, codon bias, nucleotide changes at the 3rd position (NT3s), synonymous codon usage and relative synonymous codon usage. In this study, the variations in the N proteins among 13 different coronaviruses (CoVs) were analysed at the nucleotide and amino acid levels in an attempt to reveal how these viruses adapt to their hosts relative to their preferred codon usage in the N genes. The results revealed that, overall, eighteen amino acids had different preferred codons and eight of these were over-biased. The N genes had a higher AT% over GC% and the values of their effective number of codons ranged from 40.43 to 53.85, indicating a slight codon bias. Neutrality plots and correlation analyses showed a very high level of GC3s/GC correlation in porcine epidemic diarrhea CoV (pedCoV), followed by Middle East respiratory syndrome-CoV (MERS CoV), porcine delta CoV (dCoV), bat CoV (bCoV) and feline CoV (fCoV) with r values 0.81, 0.68, -0.47, 0.98 and 0.58, respectively. These data implied a high rate of evolution of the CoV genomes and a strong influence of mutation on evolutionary selection in the CoV N genes. This type of genetic analysis would be useful for evaluating a virus's host adaptation, evolution and is thus of value to vaccine design strategies. [Sheikh, Abdullah] King Faisal Univ, Camel Res Ctr, Alhofuf 31982, Alahsa, Saudi Arabia; [Al-Taher, Abdulla; Al-Nazawi, Mohammed; Kandeel, Mahmoud] King Faisal Univ, Coll Vet Med, Dept Biomed Sci, Alhofuf 31982, Alahsa, Saudi Arabia; [Al-Mubarak, Abdullah, I] King Faisal Univ, Coll Vet Med, Dept Microbiol, Alhofuf 31982, Alahsa, Saudi Arabia; [Kandeel, Mahmoud] Kafrelsheikh Univ, Fac Vet Med, Dept Pharmacol, Kafrelsheikh 33516, Egypt Sheikh, A (reprint author), King Faisal Univ, Camel Res Ctr, Alhofuf 31982, Alahsa, Saudi Arabia. Al-Taher, Abdulla/P-6246-2016; Kandeel, Mahmoud/G-3636-2016; Sheikh, Abdullah/X-7065-2018 Al-Taher, Abdulla/0000-0002-0831-6486; Kandeel, Mahmoud/0000-0003-3668-5147; Sheikh, Abdullah/0000-0002-0482-503X Deanship of Scientific Research at King Faisal University [171001] The authors acknowledge the Deanship of Scientific Research at King Faisal University for the financial support under strategic projects track [grant number 171001]. 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Virol. Methods MAR 2020 277 113806 10.1016/j.jviromet.2019.113806 8 Biochemical Research Methods; Biotechnology & Applied Microbiology; Virology Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Virology KM6NT WOS:000514255500007 31911390 Bronze 2020-04-01 J Luo, H; Tang, QL; Shang, YX; Liang, SB; Yang, M; Robinson, N; Liu, JP Luo Hui; Tang Qiao-ling; Shang Ya-xi; Liang Shi-bing; Yang Ming; Robinson, Nicola; Liu Jian-ping Can Chinese Medicine Be Used for Prevention of Corona Virus Disease 2019 (COVID-19)? A Review of Historical Classics, Research Evidence and Current Prevention Programs CHINESE JOURNAL OF INTEGRATIVE MEDICINE English Review; Early Access Chinese medicine; corona virus disease 2019 (COVID-19); prevention program; clinical evidence; review ACUTE RESPIRATORY SYNDROME Objective Since December 2019, an outbreak of corona virus disease 2019 (COVID-19) occurred in Wuhan, and rapidly spread to almost all parts of China. This was followed by prevention programs recommending Chinese medicine (CM) for the prevention. In order to provide evidence for CM recommendations, we reviewed ancient classics and human studies. Methods Historical records on prevention and treatment of infections in CM classics, clinical evidence of CM on the prevention of severe acute respiratory syndrome (SARS) and H1N1 influenza, and CM prevention programs issued by health authorities in China since the COVID-19 outbreak were retrieved from different databases and websites till 12 February, 2020. Research evidence included data from clinical trials, cohort or other population studies using CM for preventing contagious respiratory virus diseases. Results The use of CM to prevent epidemics of infectious diseases was traced back to ancient Chinese practice cited in Huangdi's Internal Classic (Huang Di Nei Jing) where preventive effects were recorded. There were 3 studies using CM for prevention of SARS and 4 studies for H1N1 influenza. None of the participants who took CM contracted SARS in the 3 studies. The infection rate of H1N1 influenza in the CM group was significantly lower than the non-CM group (relative risk 0.36, 95% confidence interval 0.24-0.52; n=4). For prevention of COVID-19, 23 provinces in China issued CM programs. The main principles of CM use were to tonify qi to protect from external pathogens, disperse wind and discharge heat, and resolve dampness. The most frequently used herbs included Radix astragali (Huangqi), Radix glycyrrhizae (Gancao), Radix saposhnikoviae (Fangfeng), Rhizoma Atractylodis Macrocephalae (Baizhu), Lonicerae Japonicae Flos (Jinyinhua), and Fructus forsythia (Lianqiao). Conclusions Based on historical records and human evidence of SARS and H1N1 influenza prevention, Chinese herbal formula could be an alternative approach for prevention of COVID-19 in high-risk population. Prospective, rigorous population studies are warranted to confirm the potential preventive effect of CM. [Luo Hui] China Tibetol Res Ctr, Inst Tibetan Med, Beijing 100101, Peoples R China; [Luo Hui; Shang Ya-xi; Liang Shi-bing; Yang Ming; Robinson, Nicola; Liu Jian-ping] Beijing Univ Chinese Med, Ctr Evidence Based Chinese Med, Beijing 100029, Peoples R China; [Tang Qiao-ling; Shang Ya-xi; Liang Shi-bing; Yang Ming] Beijing Univ Chinese Med, Sch Tradit Chinese Med, Beijing 100029, Peoples R China; [Robinson, Nicola] London South Bank Univ, Sch Hlth & Social Care, London SE1 0AA, England; [Liu Jian-ping] Guangzhou Med Univ, Inst Integrated Tradit Chinese Med & Western Med, Guangzhou 510120, Peoples R China Liu, JP (reprint author), Beijing Univ Chinese Med, Ctr Evidence Based Chinese Med, Beijing 100029, Peoples R China.; Liu, JP (reprint author), Guangzhou Med Univ, Inst Integrated Tradit Chinese Med & Western Med, Guangzhou 510120, Peoples R China. jianping_l@hotmail.com National Natural Science Foundation of China, ChinaNational Natural Science Foundation of China [81830115]; Overseas Expertise Project, Ministry of Education of China [MS20080009] Supported by the National Natural Science Foundation of China (No.81830115), China; Prof. Nicola Robinson (visiting professor of Beijing University of Chinese Medicine) is supported by the Overseas Expertise Project, Ministry of Education of China (No. MS20080009) [Anonymous], 2007, GEN TREATISE FEBRILE; [Anonymous], 2020, FEB 12 DAIL BRIEF NO; [Anonymous], 2020, 22 WHO; [Anonymous], 2011, ESSENTIAL PRESCRIPTI; [Anonymous], 2004, SARS CLIN TRIALS TRE; Chen M, 2013, THESIS; Chen N, 2020, LANCET; Cheng KF, 2007, INT J INFECT DIS, V11, P360, DOI 10.1016/j.ijid.2006.07.009; Du CYQ, 2015, PHYTOTHER RES, V29, P656, DOI 10.1002/ptr.5290; Gao J, 2009, CHINESE MED J-PEKING, V122, P1636, DOI 10.3760/cma.j.issn.0366-6999.2009.14.007; Gao Y, 2020, EPIDEMIC DYNAMICS 20; Lau JTF, 2005, J ALTERN COMPLEM MED, V11, P49, DOI 10.1089/acm.2005.11.49; Liu B, 2010, TRADIT CHIN MED RES, V23, P46; Liu JP, 2004, J ALTERN COMPLEM MED, V10, P1041, DOI 10.1089/acm.2004.10.1041; Liu L, 2013, BEIJING J TRADIT CHI, V32, P91; Liu LiSong, 2015, International Journal of Biotechnology for Wellness Industries, V4, P57; National Administration of Traditional Chinese Medicine, 2009, CHIN COMM DOCTORS CH, V25, P13; National Health Commission of People's Republic of China, 2020, DIAGN TREATM PNEUM C; NEEDHAM J, 1962, J Hist Med Allied Sci, V17, P429; Ou AH, 2014, CHIN J INTEGR MED, V20, P101, DOI 10.1007/s11655-013-1582-8; Song Y, 2019, SHAANXI J TRADIT CHI, V40, P886; Su Y, 2005, J PRACT TRADIT CHIN, V21, P508; Wang, 2011, JILIN J TRADIT CHIN, V31, P197; Wang C, 2020, LANCET; Wang C, 2011, ANN INTERN MED, V155, P217, DOI 10.7326/0003-4819-155-4-201108160-00005; Wang D, 2020, JAMA; World Health Organization, 2020, Q A COR; Xia B, 2010, PEOPLES MILITARY SUR, V53, P645; Xu J, 2006, C PREV TREATM SARS I, P158; Yao W, 2009, THESIS; Yuan Y, 1990, J CHENGDU U TRADIT C, V13, P46; [钟燕春 Zhong Yanchun], 2011, [南京中医药大学学报, Journal of Nanjing University of Traditional Chinese Medicine], V27, P209; 张丽, 2005, [中国医院药学杂志, Chinese Journal of Hospital Pharmacy], V25, P59 33 0 0 37 37 SPRINGER NEW YORK ONE NEW YORK PLAZA, SUITE 4600, NEW YORK, NY, UNITED STATES 1672-0415 1993-0402 CHIN J INTEGR MED Chin. J. Integr. Med. 10.1007/s11655-020-3192-6 FEB 2020 8 Integrative & Complementary Medicine Integrative & Complementary Medicine KP5FA WOS:000516262000001 32065348 Bronze 2020-04-01 J Wang, ZW; Chen, XR; Lu, YF; Chen, FF; Zhang, W Wang, Zhenwei; Chen, Xiaorong; Lu, Yunfei; Chen, Feifei; Zhang, Wei Clinical characteristics and therapeutic procedure for four cases with 2019 novel coronavirus pneumonia receiving combined Chinese and Western medicine treatment BIOSCIENCE TRENDS English Article 2019-nCoV; lopinavir; ritonavir; atbidol; Shufeng Jiedu Capsule Pneumonia associated with the 2019 novel coronavirus (2019-nCoV) is continuously and rapidly circulating at present. No effective antiviral treatment has been verified thus far. We report here the clinical characteristics and therapeutic procedure for four patients with mild or severe 2019-nCoV pneumonia admitted to Shanghai Public Health Clinical Center. All the patients were given antiviral treatment including lopinavir/ritonavir (Kaletra (R)), arbidol, and Shufeng Jiedu Capsule (SFJDC, a traditional Chinese medicine) and other necessary support care. After treatment, three patients gained significant improvement in pneumonia associated symptoms, two of whom were confirmed 2019-nCoV negative and discharged, and one of whom was virus negative at the first test. The remaining patient with severe pneumonia had shown signs of improvement by the cutoff date for data collection. Results obtained in the current study may provide clues for treatment of 2019-nCoV pneumonia. The efficacy of antiviral treatment including lopinavir/ritonavir, arbidol, and SFJDC warrants further verification in future study. [Wang, Zhenwei] Shanghai Univ Tradit Chinese Med, Yueyang Hosp Integrated Tradit Chinese & Western, Dept Resp Dis, Shanghai, Peoples R China; [Chen, Xiaorong; Lu, Yunfei] Shanghai Publ Hlth Clin Ctr, Dept Tradit Chinese Med, Shanghai, Peoples R China; [Chen, Feifei; Zhang, Wei] Shanghai Univ Tradit Chinese Med, Shuguang Hosp, Dept Resp Dis, Shanghai, Peoples R China Zhang, W (reprint author), Shanghai Univ Tradit Chinese Med, Shuguang Hosp, Dept Resp Dis, Shanghai, Peoples R China. zhangw1190@sina.com Shanghai Municipal Key Clinical Specialty [shslczdzk05101]; Shanghai Key Clinical Laboratory of Internal Medicine of Traditional Chinese Medicine [14DZ2273200] The study is supported by Shanghai Municipal Key Clinical Specialty (shslczdzk05101) and Shanghai Key Clinical Laboratory of Internal Medicine of Traditional Chinese Medicine (14DZ2273200). 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